Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001087A_C01 KMC001087A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200025.1| putative protein; protein id: At5g52120.1, supp... 35 9e-05
pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thalia... 37 0.003
gb|AAK59472.2| unknown protein [Arabidopsis thaliana] 37 0.003
ref|NP_567108.1| putative protein; protein id: At3g61060.1, supp... 37 0.003
gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-... 40 0.016
>ref|NP_200025.1| putative protein; protein id: At5g52120.1, supported by cDNA:
gi_18175687, supported by cDNA: gi_20465820 [Arabidopsis
thaliana] gi|18175688|gb|AAL59911.1| unknown protein
[Arabidopsis thaliana] gi|20465821|gb|AAM20015.1|
unknown protein [Arabidopsis thaliana]
Length = 291
Score = 35.4 bits (80), Expect(2) = 9e-05
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 523 ECYLSGPGEWAYYHVGNFIVEQPNEPTQSPSFLLAQID 410
E +L G W Y+H G+F+VE N P F + QID
Sbjct: 227 ERHLDESGRWVYHHAGDFVVENQNSPVW-VKFSMLQID 263
Score = 31.6 bits (70), Expect(2) = 9e-05
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 407 CTQ*PKGALCIDSAIICPTDFRERLKH 327
CT KG LC+D IICP ++R + K+
Sbjct: 264 CTH-TKGGLCLDCVIICPFEYRGKYKY 289
>pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thaliana
gi|8388622|emb|CAB94142.1| putative protein [Arabidopsis
thaliana] gi|24030237|gb|AAN41295.1| unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 37.0 bits (84), Expect(2) = 0.003
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -1
Query: 520 CYLSG-PGEWAYYHVGNFIVEQPNEPTQSPSFLLAQID 410
CYL+ PG W++YHVG+F V P+ T F + QID
Sbjct: 226 CYLNNNPGSWSHYHVGDFKVTNPDVST-GIKFSMTQID 262
Score = 24.6 bits (52), Expect(2) = 0.003
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 407 CTQ*PKGALCIDSAIICPTD 348
CT KG LCIDS +I P +
Sbjct: 263 CTH-TKGGLCIDSVLILPKE 281
>gb|AAK59472.2| unknown protein [Arabidopsis thaliana]
Length = 269
Score = 37.0 bits (84), Expect(2) = 0.003
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -1
Query: 520 CYLSG-PGEWAYYHVGNFIVEQPNEPTQSPSFLLAQID 410
CYL+ PG W++YHVG+F V P+ T F + QID
Sbjct: 205 CYLNNNPGSWSHYHVGDFKVTNPDVST-GIKFSMTQID 241
Score = 24.6 bits (52), Expect(2) = 0.003
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 407 CTQ*PKGALCIDSAIICPTD 348
CT KG LCIDS +I P +
Sbjct: 242 CTH-TKGGLCIDSVLILPKE 260
>ref|NP_567108.1| putative protein; protein id: At3g61060.1, supported by cDNA:
gi_14334587 [Arabidopsis thaliana]
Length = 254
Score = 37.0 bits (84), Expect(2) = 0.003
Identities = 18/38 (47%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -1
Query: 520 CYLSG-PGEWAYYHVGNFIVEQPNEPTQSPSFLLAQID 410
CYL+ PG W++YHVG+F V P+ T F + QID
Sbjct: 190 CYLNNNPGSWSHYHVGDFKVTNPDVST-GIKFSMTQID 226
Score = 24.6 bits (52), Expect(2) = 0.003
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 407 CTQ*PKGALCIDSAIICPTD 348
CT KG LCIDS +I P +
Sbjct: 227 CTH-TKGGLCIDSVLILPKE 245
>gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 40.0 bits (92), Expect = 0.016
Identities = 17/38 (44%), Positives = 24/38 (62%)
Frame = -1
Query: 523 ECYLSGPGEWAYYHVGNFIVEQPNEPTQSPSFLLAQID 410
+C L PG W YH G+F+V +P++ T F +AQID
Sbjct: 241 QCSLGEPGSWVLYHAGDFVVSKPDQ-TIKLKFSMAQID 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,482,583
Number of Sequences: 1393205
Number of extensions: 9663370
Number of successful extensions: 24451
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24450
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
