Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001082A_C01 KMC001082A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB62641.1| putative DNA repair and recombination protein [O... 108 4e-23
ref|NP_179466.1| putative SNF2/RAD54 family DNA repair and recom... 92 7e-18
gb|EAA33722.1| hypothetical protein [Neurospora crassa] 40 0.024
gb|AAK13590.1|AF154413_1 pecanex [Takifugu rubripes] 36 0.46
pir||T28956 hypothetical protein F45F2.10 - Caenorhabditis elegans 33 3.9
>dbj|BAB62641.1| putative DNA repair and recombination protein [Oryza sativa (japonica
cultivar-group)] gi|15408866|dbj|BAB64255.1| putative DNA
repair and recombination protein [Oryza sativa (japonica
cultivar-group)] gi|20804446|dbj|BAB92143.1| putative DNA
repair and recombination protein [Oryza sativa (japonica
cultivar-group)]
Length = 1187
Score = 108 bits (271), Expect = 4e-23
Identities = 51/91 (56%), Positives = 71/91 (77%)
Frame = -3
Query: 617 SSTTNQARSTDVRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSASIVQHFKDRVSSR 438
+S + S + R+S ++ S QPEVLIRQ+CTF+QQ GGS+SS SI +HFK+R+ S+
Sbjct: 1097 ASNHTSSSSGNGRASSSSTRSMIVQPEVLIRQLCTFIQQHGGSASSTSITEHFKNRILSK 1156
Query: 437 ELALFKNMLKEIAILQKGSNGSHWVLKPEYQ 345
++ LFKN+LKEIA LQ+G+NG+ WVLKP+YQ
Sbjct: 1157 DMLLFKNLLKEIATLQRGANGATWVLKPDYQ 1187
>ref|NP_179466.1| putative SNF2/RAD54 family DNA repair and recombination protein;
protein id: At2g18760.1 [Arabidopsis thaliana]
gi|25411899|pir||C84568 hypothetical protein At2g18760
[imported] - Arabidopsis thaliana
gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
repair and recombination protein [Arabidopsis thaliana]
Length = 1187
Score = 91.7 bits (226), Expect = 7e-18
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = -3
Query: 602 QARSTDVRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSASIVQHFKDRVSSRELALF 423
Q +S+ SS ++ QPEVLIR+IC+F+QQ+GGS+ + SIV HF+D VS + LF
Sbjct: 1101 QPQSSFPSSSGSSSRVGSLQPEVLIRKICSFVQQKGGSADTTSIVNHFRDIVSFNDKQLF 1160
Query: 422 KNMLKEIAILQKGSNGSHWVLKPEYQ 345
KN+LKEIA L+K N S WVLK EY+
Sbjct: 1161 KNLLKEIATLEKDQNRSFWVLKSEYK 1186
>gb|EAA33722.1| hypothetical protein [Neurospora crassa]
Length = 1150
Score = 40.0 bits (92), Expect = 0.024
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = -3
Query: 581 RSSRAAENSS--GSQPEVLIRQICTFLQQQGGSSSSASIVQHFKDR-VSSRELALFKNML 411
R+SR A S + E R I F+++ GG S S+V HF +R+ +FK L
Sbjct: 1067 RASRPATPSDKRNLKAEDFERMIPAFIKRHGGRVPSKSLVDHFNHYCTGARQADMFKIAL 1126
Query: 410 KEIAILQKGSNGSH--WVLKPEY 348
+++A L+K + W ++PEY
Sbjct: 1127 EKVAKLEKKGSSMRGIWTVRPEY 1149
>gb|AAK13590.1|AF154413_1 pecanex [Takifugu rubripes]
Length = 1703
Score = 35.8 bits (81), Expect = 0.46
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +1
Query: 298 HAVVIEILANSLLYCY*YSGFRTQWEP------FDPFCKIAISFNIFLNRASS 438
++++ I+ +LLYC+ Y + WEP F FC + ++ + L+R SS
Sbjct: 574 YSILRSIVTVALLYCFCYGALKENWEPHHIPVLFSVFCGLLVAVSYHLSRQSS 626
>pir||T28956 hypothetical protein F45F2.10 - Caenorhabditis elegans
Length = 1029
Score = 32.7 bits (73), Expect = 3.9
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 587 DVRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSAS 474
D +S + E SSG + E++I++ + + GGSSSS+S
Sbjct: 4 DKKSKQKKEGSSGQEVEIVIKRKNSIVDSSGGSSSSSS 41
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,935,819
Number of Sequences: 1393205
Number of extensions: 9944572
Number of successful extensions: 19610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19607
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
