Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001080A_C02 KMC001080A_c02
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180167.1| KH domain protein; protein id: At2g25970.1, sup... 68 1e-10
ref|NP_196037.2| EF - hand Calcium binding protein - like; prote... 60 3e-08
gb|EAA42608.1| GLP_487_50358_53330 [Giardia lamblia ATCC 50803] 59 4e-08
gb|AAH49308.1| Similar to pigpen [Danio rerio] 58 9e-08
ref|NP_695271.1| narrowly conserved hypothetical protein [Bifido... 58 9e-08
>ref|NP_180167.1| KH domain protein; protein id: At2g25970.1, supported by cDNA:
gi_19310434 [Arabidopsis thaliana]
gi|7487198|pir||T02627 hypothetical protein At2g25960
[imported] - Arabidopsis thaliana
gi|19310435|gb|AAL84954.1| F17H15.1/F17H15.1
[Arabidopsis thaliana] gi|20197266|gb|AAM15002.1|
unknown protein [Arabidopsis thaliana]
gi|20197368|gb|AAM15045.1| unknown protein [Arabidopsis
thaliana]
Length = 632
Score = 67.8 bits (164), Expect = 1e-10
Identities = 52/119 (43%), Positives = 61/119 (50%), Gaps = 2/119 (1%)
Frame = -2
Query: 602 PSGTPPVYGQS-QSPSTAGGYG-QSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQ 429
P+ PP YGQS QSP G YG QS Y AQP+ +GY QP PA GYG A PQ
Sbjct: 533 PASKPPTYGQSQQSPGAPGSYGSQSGY--AQPAASGYGQP----PAYGYGQA------PQ 580
Query: 428 SYGAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQGGVAKASPQS 252
YG+ G Y Q G SS G+ A A+ G G + +AA G KASP+S
Sbjct: 581 GYGS-YGGYTQPAAGGGYSSDGS------AGATAGGGGGTPASQSAAPPAGPPKASPKS 632
Score = 54.7 bits (130), Expect = 9e-07
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
Frame = -2
Query: 590 PPVYGQSQSPS-----TAGGYGQSAYPPAQPSPAG----YAQPDQKAPASGYGVAAQPGY 438
PP YGQS S +AG Y QS+ PP+Q S G Y Q + P+SG A
Sbjct: 354 PPQYGQSPYGSYPQQTSAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSAPPTDT 413
Query: 437 GPQSYGAPQGSYGQAPPSYGNSSYGA-------GYAQTPAYASDGTNGAPAQAAAAAQQG 279
+Y YGQA Y YGA GY Q Y G G+ +Q+
Sbjct: 414 TGYNYYQHASGYGQAGQGYQQDGYGAYNASQQSGYGQAAGYDQQGGYGSTTN---PSQEE 470
Query: 278 GVAKASPQS 252
++A+P S
Sbjct: 471 DASQAAPPS 479
Score = 52.8 bits (125), Expect = 4e-06
Identities = 42/108 (38%), Positives = 49/108 (44%), Gaps = 12/108 (11%)
Frame = -2
Query: 581 YGQS-QSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQGS 405
YG + Q P G GQ+ Y S AGY+ A SGYG A P P +YG Q S
Sbjct: 488 YGTTGQQPPAQGSTGQAGYGAPPTSQAGYSSQPAAAYNSGYG-APPPASKPPTYGQSQQS 546
Query: 404 YGQAPPSYGNSS-----YGAGYAQTPAYASD------GTNGAPAQAAA 294
G AP SYG+ S +GY Q PAY G+ G Q AA
Sbjct: 547 PG-APGSYGSQSGYAQPAASGYGQPPAYGYGQAPQGYGSYGGYTQPAA 593
Score = 44.3 bits (103), Expect = 0.001
Identities = 34/95 (35%), Positives = 47/95 (48%)
Frame = -2
Query: 569 QSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQGSYGQAP 390
++ + GGY Q A+P P+ +A P G AQPGYG Y P G+Y P
Sbjct: 308 RNSAMGGGYPQQGGYQARP-PSSWAPPG--------GPPAQPGYG--GYMQP-GAY-PGP 354
Query: 389 PSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQ 285
P YG S YG+ QT A D ++ P+Q +A +
Sbjct: 355 PQYGQSPYGSYPQQTSAGYYDQSSVPPSQQSAQGE 389
Score = 40.8 bits (94), Expect = 0.014
Identities = 46/145 (31%), Positives = 53/145 (35%), Gaps = 42/145 (28%)
Frame = -2
Query: 587 PVYGQSQSPST----------AGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAA---- 450
P G S +P T A GYGQ+ Q Y Q SGYG AA
Sbjct: 401 PSSGGSSAPPTDTTGYNYYQHASGYGQAGQGYQQDGYGAYNASQQ----SGYGQAAGYDQ 456
Query: 449 QPGYG-------------------PQSYGAPQGSYGQAPP---SYGNSSYG------AGY 354
Q GYG QS A G+ GQ PP S G + YG AGY
Sbjct: 457 QGGYGSTTNPSQEEDASQAAPPSSAQSGQAGYGTTGQQPPAQGSTGQAGYGAPPTSQAGY 516
Query: 353 AQTPAYASDGTNGAPAQAAAAAQQG 279
+ PA A + GAP A+ G
Sbjct: 517 SSQPAAAYNSGYGAPPPASKPPTYG 541
Score = 37.4 bits (85), Expect = 0.16
Identities = 38/141 (26%), Positives = 46/141 (31%), Gaps = 28/141 (19%)
Frame = -2
Query: 590 PPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQP-----DQKAPASGYGVAAQPG----- 441
P + P GYG P A P P Y Q Q+ A Y ++ P
Sbjct: 327 PSSWAPPGGPPAQPGYGGYMQPGAYPGPPQYGQSPYGSYPQQTSAGYYDQSSVPPSQQSA 386
Query: 440 ------YGPQSYGAPQGSYGQAPPS----YGNSSYGAGYAQT-PAYASDGTNGAPA---- 306
YG Q P APP+ Y + +GY Q Y DG A
Sbjct: 387 QGEYDYYGQQQSQQPSSGGSSAPPTDTTGYNYYQHASGYGQAGQGYQQDGYGAYNASQQS 446
Query: 305 ---QAAAAAQQGGVAKASPQS 252
QAA QQGG + S
Sbjct: 447 GYGQAAGYDQQGGYGSTTNPS 467
>ref|NP_196037.2| EF - hand Calcium binding protein - like; protein id: At5g04170.1,
supported by cDNA: gi_19698990 [Arabidopsis thaliana]
gi|9955572|emb|CAC05499.1| EF-hand Calcium binding
protein-like [Arabidopsis thaliana]
gi|19698991|gb|AAL91231.1| EF-hand calcium binding
protein-like [Arabidopsis thaliana]
Length = 354
Score = 59.7 bits (143), Expect = 3e-08
Identities = 51/150 (34%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Frame = -2
Query: 617 PQPVKPSG-TPPVYGQS----------------QSPSTAGGYGQSAY------PPAQPSP 507
PQP SG P YG S S S+A YG S+Y P PSP
Sbjct: 24 PQPPYSSGGNNPPYGSSTTSSPYAVPYGASKPQSSSSSAPTYGSSSYGAPPPSAPYAPSP 83
Query: 506 AGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQGSYGQAPPSYGNSSYGAGYAQTPAYA-S 330
Y +P ++ P G G A P G YG SYG P S +G GY TP + S
Sbjct: 84 GDYNKPPKEKPYGG-GYGAPPPSGSSDYG----SYGAGPRPSQPSGHGGGYGATPPHGVS 138
Query: 329 D--GTNGAPAQAAAAAQQGGVAKASPQS*Y 246
D GAP + A++ GG PQ+ Y
Sbjct: 139 DYGSYGGAPPRPASSGHGGGYGGYPPQASY 168
Score = 38.9 bits (89), Expect = 0.054
Identities = 32/97 (32%), Positives = 36/97 (36%)
Frame = -2
Query: 599 SGTPPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYG 420
SG PP SQ G G PP P +G P G + P P
Sbjct: 2 SGYPPT---SQGYGYGYGGGNQPPPPQPPYSSGGNNPPY-----GSSTTSSPYAVPYGAS 53
Query: 419 APQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAP 309
PQ S AP +YG+SSYGA P S G P
Sbjct: 54 KPQSSSSSAP-TYGSSSYGAPPPSAPYAPSPGDYNKP 89
>gb|EAA42608.1| GLP_487_50358_53330 [Giardia lamblia ATCC 50803]
Length = 990
Score = 59.3 bits (142), Expect = 4e-08
Identities = 44/125 (35%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Frame = -2
Query: 617 PQPVKPSGTPPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKA-----PASGYGVA 453
P P+G P YG S+ G YG A P A P P G + P A PA YG
Sbjct: 5 PYNSAPAGNP--YGGPPQMSSGGPYGAGA-PQAGPGPYGSSMPSANAGPYGAPAGPYGAQ 61
Query: 452 AQPGYGPQSYGAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQGGV 273
AQ GP YGA Q + A YG+++ G G + P A+ T G A A GG
Sbjct: 62 AQGASGP--YGASQAAPQPASGPYGSTAPGYGASAQPYGAAASTAGVGPYGAGAPSMGGS 119
Query: 272 AKASP 258
P
Sbjct: 120 GVGGP 124
Score = 42.7 bits (99), Expect = 0.004
Identities = 42/126 (33%), Positives = 48/126 (37%), Gaps = 7/126 (5%)
Frame = -2
Query: 617 PQPVKPSGTPPVYGQSQSPSTAGGYGQS-AYPPAQPSPAGYAQPDQKAPASGY-GVAAQP 444
PQP SG P YG S + + G S Y PS AG AP GY G + P
Sbjct: 855 PQPA--SGAPGPYGSSVASNLYGAVSSSNPYAAGNPS-AGSNMGPYGAPQQGYSGAVSAP 911
Query: 443 GYGPQSYGA--PQGSYGQAPPSYG---NSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQG 279
SYGA P +YG P G + YGA P Y + P AA A
Sbjct: 912 APMSGSYGAGVPVSTYGSTPAPAGPGASGPYGAPQTSNP-YGAPAPASNPYGAATAPNPY 970
Query: 278 GVAKAS 261
G S
Sbjct: 971 GAPSGS 976
Score = 41.6 bits (96), Expect = 0.008
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -2
Query: 599 SGTPPVYGQSQSPSTAGGYG--QSAYPPAQPSPAGYAQP-DQKAPASGYGVAAQPGYGPQ 429
S P G + S G YG Q Y A +PA + P S YG P GP
Sbjct: 879 SSNPYAAGNPSAGSNMGPYGAPQQGYSGAVSAPAPMSGSYGAGVPVSTYGSTPAPA-GPG 937
Query: 428 S---YGAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTN 318
+ YGAPQ S P+ ++ YGA A P A G+N
Sbjct: 938 ASGPYGAPQTSNPYGAPAPASNPYGAATAPNPYGAPSGSN 977
Score = 38.5 bits (88), Expect = 0.070
Identities = 40/116 (34%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Frame = -2
Query: 617 PQPVK-PSG-TPPVYGQSQSP--STAGGYGQSAYPPAQPS--------PAGYAQP----- 489
PQP P G T P YG S P + A G Y PS P YA P
Sbjct: 76 PQPASGPYGSTAPGYGASAQPYGAAASTAGVGPYGAGAPSMGGSGVGGPGPYANPGGPYG 135
Query: 488 -DQKAPASGYGVAAQPGYGPQSYGAPQGSYGQAPPSYGNSSYG------AGYAQTP 342
+ PA YG AQPG YGA QG G P+ G GY+Q P
Sbjct: 136 SSGQPPAGLYGSGAQPGMMGGPYGA-QGQMGMGGPAPGYEQTRIPGMDVGGYSQGP 190
Score = 36.6 bits (83), Expect = 0.27
Identities = 35/109 (32%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Frame = -2
Query: 524 PAQPSPAGYAQPDQKAPASGYGVAAQP---GYGPQSYGAPQGSYGQ--------APPSYG 378
P Q P Q Q P++ A QP G Q +G G YGQ AP YG
Sbjct: 807 PQQQCPVIPQQGYQGQPSASLYSAGQPPVSAVGGQGFGQSGGMYGQGVPQPASGAPGPYG 866
Query: 377 NSS----YGAGYAQTPAYA---SDGTNGAPAQAAAAAQQGGVAKASPQS 252
+S YGA + P A S G+N P A G V+ +P S
Sbjct: 867 SSVASNLYGAVSSSNPYAAGNPSAGSNMGPYGAPQQGYSGAVSAPAPMS 915
>gb|AAH49308.1| Similar to pigpen [Danio rerio]
Length = 410
Score = 58.2 bits (139), Expect = 9e-08
Identities = 43/120 (35%), Positives = 52/120 (42%), Gaps = 8/120 (6%)
Frame = -2
Query: 611 PVKPSGTPPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQP---- 444
P G YGQSQS GGYG A P+Q GY+Q Q + GY +QP
Sbjct: 51 PYNQGGYSSNYGQSQS----GGYGSQA--PSQ----GYSQSSQSYSSGGYSNTSQPPPAQ 100
Query: 443 --GYGPQSY--GAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQGG 276
GY QS G Q S AP Y +SS +GY Q + G G+ Q+ GG
Sbjct: 101 SGGYSQQSSYSGYNQSSPASAPGGYSSSSQSSGYGQQQQQSGGGYGGSGGQSGGYGSSGG 160
Score = 50.1 bits (118), Expect = 2e-05
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Frame = -2
Query: 581 YGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQGSY 402
YGQ+ S G GQS +QPS Y+Q GY +++ P + G +Y
Sbjct: 6 YGQTSSHGYGGYGGQSGQSYSQPSAQNYSQQSY----GGYNQSSESSSAPYNQGGYSSNY 61
Query: 401 GQAPP-SYGNSSYGAGYAQ-TPAYASDGTNGA----PAQAAAAAQQ---GGVAKASPQS 252
GQ+ YG+ + GY+Q + +Y+S G + PAQ+ +QQ G ++SP S
Sbjct: 62 GQSQSGGYGSQAPSQGYSQSSQSYSSGGYSNTSQPPPAQSGGYSQQSSYSGYNQSSPAS 120
Score = 40.4 bits (93), Expect = 0.019
Identities = 34/105 (32%), Positives = 41/105 (38%), Gaps = 16/105 (15%)
Frame = -2
Query: 581 YGQSQSPSTAGGYGQSA-----YPPAQPSPAGYAQPD---QKAPASGYGVAAQPGYG--- 435
YGQ Q S GGYG S Y + +G+ Q + + G + P Y
Sbjct: 134 YGQQQQQS-GGGYGGSGGQSGGYGSSGGQSSGFGGSGGQHQSSQSGGGSYSPSPNYSSPP 192
Query: 434 PQSYGAP----QGSYGQAPPSYGNSSYGAGYA-QTPAYASDGTNG 315
PQSYG QG Y Q P G GY Q Y+ DG G
Sbjct: 193 PQSYGQQSQYGQGGYNQDSPPMSGGGGGGGYGGQDGGYSQDGRGG 237
Score = 32.0 bits (71), Expect = 6.6
Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 3/79 (3%)
Frame = -2
Query: 473 ASGYGVAAQPGYGPQSYGAPQG-SYGQ-APPSYGNSSYGAGYAQTPAYASDGTN-GAPAQ 303
++ YG + GYG YG G SY Q + +Y SYG GY Q+ +S N G +
Sbjct: 3 SNDYGQTSSHGYG--GYGGQSGQSYSQPSAQNYSQQSYG-GYNQSSESSSAPYNQGGYSS 59
Query: 302 AAAAAQQGGVAKASPQS*Y 246
+Q GG +P Y
Sbjct: 60 NYGQSQSGGYGSQAPSQGY 78
>ref|NP_695271.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705] gi|23325229|gb|AAN23907.1|AE014618_4 narrowly
conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 216
Score = 58.2 bits (139), Expect = 9e-08
Identities = 46/119 (38%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Frame = -2
Query: 617 PQPVKPSG-TPPVYGQ--SQSPSTAGGYGQSAYPPAQPSPAGYAQ--PDQKAPASGYGVA 453
PQP +P+ P YGQ +Q P G +AY AQP+ Y Q P PA Y
Sbjct: 26 PQPAQPAQPAQPSYGQDAAQQPQGYGAPQPAAY--AQPAAGSYGQQQPQYGQPAGAY--- 80
Query: 452 AQPGYGPQSYG---APQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQ 285
AQP YG YG P YGQ P YG Y Q AYA AP AA Q
Sbjct: 81 AQPQYGQPQYGQPAQPAAGYGQQP------GYGQAYQQPNAYAQPQYTAAPYAAAPVGQ 133
Score = 48.9 bits (115), Expect = 5e-05
Identities = 46/108 (42%), Positives = 50/108 (45%), Gaps = 11/108 (10%)
Frame = -2
Query: 545 YGQSAYP-PAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQ---------GSYGQ 396
YG + P PAQP AQP Q P+ G A QP Q YGAPQ GSYGQ
Sbjct: 20 YGSDSVPQPAQP-----AQPAQ--PSYGQDAAQQP----QGYGAPQPAAYAQPAAGSYGQ 68
Query: 395 APPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAA-AQQGGVAKASPQ 255
P YG + YAQ P Y G PAQ AA QQ G +A Q
Sbjct: 69 QQPQYGQPA--GAYAQ-PQYGQP-QYGQPAQPAAGYGQQPGYGQAYQQ 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,415,448
Number of Sequences: 1393205
Number of extensions: 14411853
Number of successful extensions: 93461
Number of sequences better than 10.0: 3205
Number of HSP's better than 10.0 without gapping: 64861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82679
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
