Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001078A_C01 KMC001078A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA58586.1| mineralocorticoid receptor [Tupaia belangeri] 34 1.2
sp|Q29131|MCR_TUPGB Mineralocorticoid receptor (MR) gi|1644386|e... 34 1.2
ref|NP_809974.1| hypothetical protein [Bacteroides thetaiotaomic... 33 2.0
ref|NP_484656.1| nitrate reductase [Nostoc sp. PCC 7120] gi|2528... 33 2.0
gb|AAM50985.1| RE28286p [Drosophila melanogaster] 33 2.6
>emb|CAA58586.1| mineralocorticoid receptor [Tupaia belangeri]
Length = 368
Score = 34.3 bits (77), Expect = 1.2
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 554 ASGLATPKLPAMSPRVNISSQS---APNHPNVLSRMSDVASVNKSRLGTGSSIRANSPHQ 384
+S L++ K P SP + S +S +PN+ + S +S A++N SR S +AN+
Sbjct: 199 SSPLSSMKSPISSPPSHCSVKSPVSSPNNVTLRSCVSSPANINNSRCSVSSPSKANNRST 258
Query: 383 ASSP 372
SSP
Sbjct: 259 LSSP 262
>sp|Q29131|MCR_TUPGB Mineralocorticoid receptor (MR) gi|1644386|emb|CAA99376.1|
mineralocorticoid receptor [Tupaia belangeri]
Length = 977
Score = 34.3 bits (77), Expect = 1.2
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 554 ASGLATPKLPAMSPRVNISSQS---APNHPNVLSRMSDVASVNKSRLGTGSSIRANSPHQ 384
+S L++ K P SP + S +S +PN+ + S +S A++N SR S +AN+
Sbjct: 262 SSPLSSMKSPISSPPSHCSVKSPVSSPNNVTLRSCVSSPANINNSRCSVSSPSKANNRST 321
Query: 383 ASSP 372
SSP
Sbjct: 322 LSSP 325
>ref|NP_809974.1| hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29338367|gb|AAO76168.1| hypothetical protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 319
Score = 33.5 bits (75), Expect = 2.0
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
Frame = +2
Query: 275 KGRKVKVYHGLVLEQICKTFLEVIHRQINRLRLEM--KLDGES*PGCCYRCRVWICSLKP 448
+GRKV Y + + T++E Q++ LR+ +D +S P C R WI SLK
Sbjct: 234 EGRKVSFYLSNIDFEATYTYIEKQDYQVSLLRVYSINSMDSQS-PQICQIQRNWIQSLKR 292
Query: 449 HLTYVTE 469
H T ++E
Sbjct: 293 HSTLISE 299
>ref|NP_484656.1| nitrate reductase [Nostoc sp. PCC 7120] gi|25284126|pir||AC1883
nitrate reductase [imported] - Nostoc sp. (strain PCC
7120) gi|1071640|gb|AAB40292.1| narB [Nostoc sp. PCC
7120] gi|17129958|dbj|BAB72570.1| nitrate reductase
[Nostoc sp. PCC 7120]
Length = 746
Score = 33.5 bits (75), Expect = 2.0
Identities = 29/94 (30%), Positives = 39/94 (40%), Gaps = 6/94 (6%)
Frame = -3
Query: 566 RPDAASGLATPKLPAMSPR------VNISSQSAPNHPNVLSRMSDVASVNKSRLGTGSSI 405
RP SG++ +L A P +NI +Q HP V S+ S V S RL T +
Sbjct: 527 RPCDMSGISHQQLQAQGPTQWPHSSINIETQKPTQHPTVNSQQSTVTSQQSKRLYT--DL 584
Query: 404 RANSPHQASSPNVVCLSDDE*PQGMSCIFVLTQG 303
R ++P + P S FVLT G
Sbjct: 585 RFHTPDGRARFGAYYSKGLAEPPDPSYPFVLTTG 618
>gb|AAM50985.1| RE28286p [Drosophila melanogaster]
Length = 553
Score = 33.1 bits (74), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 566 RPDAASGLATPKLPAMSPRVNISSQSAPNHPNV 468
RP++ +G+A+P++P SP S+ P P+V
Sbjct: 416 RPESGTGIASPQIPPQSPEPETPSEVPPQRPSV 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,111,570
Number of Sequences: 1393205
Number of extensions: 10295578
Number of successful extensions: 24171
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24108
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
