Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001077A_C01 KMC001077A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD59413.1| SMC6 protein [Oryza sativa] 140 7e-33
gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]... 139 2e-32
ref|NP_200954.1| MIM protein; protein id: At5g61460.1, supported... 139 2e-32
ref|NP_196383.1| SMC-like protein; protein id: At5g07660.1 [Arab... 132 2e-30
dbj|BAC56937.1| structural maintenance of chromosomes protein 6 ... 76 3e-13
>emb|CAD59413.1| SMC6 protein [Oryza sativa]
Length = 1040
Score = 140 bits (354), Expect = 7e-33
Identities = 69/80 (86%), Positives = 72/80 (89%)
Frame = -2
Query: 518 ERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWICITPH 339
ERSFSTLCF LALH MTE+PFRAMDEFDVFMDAVSRKISLDTLVDFAV QGSQWI ITPH
Sbjct: 960 ERSFSTLCFTLALHGMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVTQGSQWIFITPH 1019
Query: 338 DTSSVKAGDRVKKMQMAAPR 279
D S V+ GDR+KK QMAAPR
Sbjct: 1020 DISMVQPGDRIKKQQMAAPR 1039
>gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]
gi|5880616|gb|AAD54770.1|AF120933_1 SMC-like protein
[Arabidopsis thaliana]
Length = 1055
Score = 139 bits (350), Expect = 2e-32
Identities = 67/81 (82%), Positives = 74/81 (90%)
Frame = -2
Query: 518 ERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWICITPH 339
ERSFSTLCFALALHEMTE+PFRAMDEFDVFMDAVSRKISLD LVDFA+ +GSQW+ ITPH
Sbjct: 975 ERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGSQWMFITPH 1034
Query: 338 DTSSVKAGDRVKKMQMAAPRS 276
D S VK+ +R+KK QMAAPRS
Sbjct: 1035 DISMVKSHERIKKQQMAAPRS 1055
>ref|NP_200954.1| MIM protein; protein id: At5g61460.1, supported by cDNA: gi_5880615
[Arabidopsis thaliana] gi|10177176|dbj|BAB10445.1|
SMC-like protein [Arabidopsis thaliana]
Length = 1057
Score = 139 bits (350), Expect = 2e-32
Identities = 67/81 (82%), Positives = 74/81 (90%)
Frame = -2
Query: 518 ERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWICITPH 339
ERSFSTLCFALALHEMTE+PFRAMDEFDVFMDAVSRKISLD LVDFA+ +GSQW+ ITPH
Sbjct: 977 ERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGSQWMFITPH 1036
Query: 338 DTSSVKAGDRVKKMQMAAPRS 276
D S VK+ +R+KK QMAAPRS
Sbjct: 1037 DISMVKSHERIKKQQMAAPRS 1057
>ref|NP_196383.1| SMC-like protein; protein id: At5g07660.1 [Arabidopsis thaliana]
gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis
thaliana]
Length = 1058
Score = 132 bits (332), Expect = 2e-30
Identities = 63/81 (77%), Positives = 72/81 (88%)
Frame = -2
Query: 518 ERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWICITPH 339
ERSFSTLCF LAL MTE+P RAMDEFDVFMDAVSRKISLDTL+DFA++QGSQW+ ITPH
Sbjct: 978 ERSFSTLCFTLALQNMTEAPIRAMDEFDVFMDAVSRKISLDTLIDFALKQGSQWMFITPH 1037
Query: 338 DTSSVKAGDRVKKMQMAAPRS 276
D S VK+ +++KK QMAAPRS
Sbjct: 1038 DISMVKSHEKIKKQQMAAPRS 1058
>dbj|BAC56937.1| structural maintenance of chromosomes protein 6 [Xenopus laevis]
Length = 1128
Score = 75.9 bits (185), Expect = 3e-13
Identities = 38/80 (47%), Positives = 56/80 (69%), Gaps = 1/80 (1%)
Frame = -2
Query: 518 ERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQG-SQWICITP 342
ERSFST+CF L+L + ESPFR +DEFDV+MD V+R+IS+D ++ A Q Q+I +TP
Sbjct: 1029 ERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRISMDMMLSMADSQRFRQFILLTP 1088
Query: 341 HDTSSVKAGDRVKKMQMAAP 282
+ SS+ + V+ ++M P
Sbjct: 1089 QNMSSLPSTSLVRILRMKDP 1108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,504,697
Number of Sequences: 1393205
Number of extensions: 8375020
Number of successful extensions: 19641
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 19130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19633
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
