Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001076A_C02 KMC001076A_c02
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177394.1| hypothetical protein; protein id: At1g72500.1 [... 116 3e-25
gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|2319796... 111 9e-24
gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana] 111 9e-24
ref|NP_173345.1| unknown protein; protein id: At1g19110.1 [Arabi... 111 9e-24
dbj|BAC16497.1| contains ESTs D15570(C0847A),C98159(C0847)~simil... 109 3e-23
>ref|NP_177394.1| hypothetical protein; protein id: At1g72500.1 [Arabidopsis thaliana]
gi|25406186|pir||C96749 hypothetical protein T10D10.3
[imported] - Arabidopsis thaliana
gi|12325279|gb|AAG52586.1|AC016529_17 hypothetical
protein; 14673-17893 [Arabidopsis thaliana]
Length = 758
Score = 116 bits (291), Expect = 3e-25
Identities = 68/160 (42%), Positives = 95/160 (58%), Gaps = 7/160 (4%)
Frame = -3
Query: 711 ESEELEEKVSKMSIXNKVQSEYTCMEMVLIQRDEGKKAPEPLLLKKAYSTLSLQ---RLE 541
+ +EL+EKV ++SI SEYT M + + +E K P+ +K+ Q +++
Sbjct: 601 DKKELQEKVMRLSIQTGFPSEYTQMVLSVKHDEEEKTMARPVSIKEILRNPPYQIHKQMQ 660
Query: 540 LENA--KFFLGGLSLGFGDLKATTENIPPAIKEAKPSEG--LLEKAASNCCGRLADTCCC 373
N+ + LG GFG++ AT +N+PP ++E K EG LL +AAS + D CC
Sbjct: 661 RSNSMRRSLLGKQGYGFGNVAATLKNVPPWMEEPKEVEGTELLIRAASG----VVDRVCC 716
Query: 372 MCFLQSCSLVSDRCTIVCTQLCAALACFELIKCCIEVCDC 253
MC LQ S VSD+CTIV +QLCAALACF+ I CC EVC C
Sbjct: 717 MCCLQCMSRVSDQCTIVFSQLCAALACFQCIGCCFEVCGC 756
>gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|23197960|gb|AAN15507.1|
unknown protein [Arabidopsis thaliana]
Length = 754
Score = 111 bits (278), Expect = 9e-24
Identities = 62/153 (40%), Positives = 86/153 (55%), Gaps = 2/153 (1%)
Frame = -3
Query: 711 ESEELEEKVSKMSIXNKVQSEYTCMEMVLIQRDEGKKAPEPLLLKKAYSTLSLQRLELEN 532
E ++L+EK++K+SI V SEYT M+ ++ E K E KK S Q++
Sbjct: 600 EDKQLKEKIAKLSIQTGVLSEYT--RMIQLENTEELKPSETGGKKKTTSNGEKQKMISRT 657
Query: 531 AKFFLGGLSLGFGDLKATTENIPPAIKEAKPSEGLLE--KAASNCCGRLADTCCCMCFLQ 358
L L +GFGD AT EN+PP E K + + KAAS+CC L + CCCMC +Q
Sbjct: 658 IP--LQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 715
Query: 357 SCSLVSDRCTIVCTQLCAALACFELIKCCIEVC 259
CS ++D+C +V TQL A+AC +CC VC
Sbjct: 716 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVC 748
>gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana]
Length = 736
Score = 111 bits (278), Expect = 9e-24
Identities = 62/153 (40%), Positives = 86/153 (55%), Gaps = 2/153 (1%)
Frame = -3
Query: 711 ESEELEEKVSKMSIXNKVQSEYTCMEMVLIQRDEGKKAPEPLLLKKAYSTLSLQRLELEN 532
E ++L+EK++K+SI V SEYT M+ ++ E K E KK S Q++
Sbjct: 582 EDKQLKEKIAKLSIQTGVLSEYT--RMIQLENTEELKPSETGGKKKTTSNGEKQKMISRT 639
Query: 531 AKFFLGGLSLGFGDLKATTENIPPAIKEAKPSEGLLE--KAASNCCGRLADTCCCMCFLQ 358
L L +GFGD AT EN+PP E K + + KAAS+CC L + CCCMC +Q
Sbjct: 640 IP--LQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 697
Query: 357 SCSLVSDRCTIVCTQLCAALACFELIKCCIEVC 259
CS ++D+C +V TQL A+AC +CC VC
Sbjct: 698 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVC 730
>ref|NP_173345.1| unknown protein; protein id: At1g19110.1 [Arabidopsis thaliana]
Length = 759
Score = 111 bits (278), Expect = 9e-24
Identities = 62/153 (40%), Positives = 86/153 (55%), Gaps = 2/153 (1%)
Frame = -3
Query: 711 ESEELEEKVSKMSIXNKVQSEYTCMEMVLIQRDEGKKAPEPLLLKKAYSTLSLQRLELEN 532
E ++L+EK++K+SI V SEYT M+ ++ E K E KK S Q++
Sbjct: 605 EDKQLKEKIAKLSIQTGVLSEYT--RMIQLENTEELKPSETGGKKKTTSNGEKQKMISRT 662
Query: 531 AKFFLGGLSLGFGDLKATTENIPPAIKEAKPSEGLLE--KAASNCCGRLADTCCCMCFLQ 358
L L +GFGD AT EN+PP E K + + KAAS+CC L + CCCMC +Q
Sbjct: 663 IP--LQSLGIGFGDKTATRENVPPGFGEQKAPDAAEKFVKAASSCCVSLCNKCCCMCCVQ 720
Query: 357 SCSLVSDRCTIVCTQLCAALACFELIKCCIEVC 259
CS ++D+C +V TQL A+AC +CC VC
Sbjct: 721 CCSKLNDQCVLVFTQLFTAIACIACFECCSTVC 753
>dbj|BAC16497.1| contains ESTs D15570(C0847A),C98159(C0847)~similar to Arabidopsis
thaliana chromosome 1, At1g19110~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 755
Score = 109 bits (273), Expect = 3e-23
Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Frame = -3
Query: 705 EELEEKVSKMSIXNKVQSEYTCMEMVLIQRDEGKKAPEPLLLKKAYSTLSLQRLELENAK 526
++LE KV K+SI N + SEYT MVL+Q E A + K L + E +
Sbjct: 608 KQLERKVVKLSIQNSIPSEYT--SMVLLQTLEKVDAAQ-----KVKQKLKGHKGPDEPRR 660
Query: 525 FFLGGLSLGFGDLKATTENIPPAIKEAKPSEG--LLEKAASNCCGRLADTCCCMCFLQSC 352
L L LGFGD AT EN+ + KP E +L KAA CC RLAD CCMC +++C
Sbjct: 661 IPLQCLKLGFGDRAATRENLVTGFGDVKPLETFEILNKAAG-CCSRLADCLCCMCCIKAC 719
Query: 351 SLVSDRCTIVCTQLCAALACFELIKCCIEVC 259
+ ++D+C IV TQ+CAA AC +CC E+C
Sbjct: 720 NKMNDQCAIVMTQVCAAFACLGCYECCAELC 750
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,177,963
Number of Sequences: 1393205
Number of extensions: 12535056
Number of successful extensions: 32227
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 30156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31895
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
