Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001075A_C01 KMC001075A_c01
(360 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199608.1| putative protein; protein id: At5g47970.1, supp... 53 8e-07
pir||T49192 hypothetical protein MAA21.140 - Arabidopsis thalian... 52 1e-06
gb|AAM61213.1| unknown [Arabidopsis thaliana] 52 1e-06
gb|AAN41279.1| unknown protein [Arabidopsis thaliana] 52 1e-06
ref|NP_567149.1| putative protein; protein id: At3g63510.1, supp... 52 1e-06
>ref|NP_199608.1| putative protein; protein id: At5g47970.1, supported by cDNA:
gi_18175721, supported by cDNA: gi_20466014 [Arabidopsis
thaliana] gi|18175722|gb|AAL59916.1| unknown protein
[Arabidopsis thaliana] gi|20466015|gb|AAM20229.1|
unknown protein [Arabidopsis thaliana]
Length = 387
Score = 53.1 bits (126), Expect = 8e-07
Identities = 24/44 (54%), Positives = 33/44 (74%)
Frame = -3
Query: 301 SVKSFLEETLVAIPDSVLDSTFAQPPSGRGDLFANIDSFLPPPY 170
+++SFL+E L AIPD VLDS+ + +GR DLFA++ LPPPY
Sbjct: 323 TLQSFLDEVLPAIPDYVLDSSAVKEATGREDLFADVQRLLPPPY 366
>pir||T49192 hypothetical protein MAA21.140 - Arabidopsis thaliana
gi|7573334|emb|CAB87804.1| putative protein [Arabidopsis
thaliana]
Length = 456
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/51 (54%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
Frame = -3
Query: 304 QSVKSFLEETLVAIPDSVLDSTFA-QPPSGRGDLFANIDSFLPPPYRIREE 155
+SV S LEE+L AIPD VLDS + P SG D+FA++ + LPPPY EE
Sbjct: 401 RSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEE 451
>gb|AAM61213.1| unknown [Arabidopsis thaliana]
Length = 404
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/51 (54%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
Frame = -3
Query: 304 QSVKSFLEETLVAIPDSVLDSTFA-QPPSGRGDLFANIDSFLPPPYRIREE 155
+SV S LEE+L AIPD VLDS + P SG D+FA++ + LPPPY EE
Sbjct: 349 RSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEE 399
>gb|AAN41279.1| unknown protein [Arabidopsis thaliana]
Length = 419
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/51 (54%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
Frame = -3
Query: 304 QSVKSFLEETLVAIPDSVLDSTFA-QPPSGRGDLFANIDSFLPPPYRIREE 155
+SV S LEE+L AIPD VLDS + P SG D+FA++ + LPPPY EE
Sbjct: 364 RSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEE 414
>ref|NP_567149.1| putative protein; protein id: At3g63510.1, supported by cDNA:
114107. [Arabidopsis thaliana]
Length = 404
Score = 52.4 bits (124), Expect = 1e-06
Identities = 28/51 (54%), Positives = 35/51 (67%), Gaps = 1/51 (1%)
Frame = -3
Query: 304 QSVKSFLEETLVAIPDSVLDSTFA-QPPSGRGDLFANIDSFLPPPYRIREE 155
+SV S LEE+L AIPD VLDS + P SG D+FA++ + LPPPY EE
Sbjct: 349 RSVGSLLEESLRAIPDCVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEE 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,940,384
Number of Sequences: 1393205
Number of extensions: 5590947
Number of successful extensions: 12594
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12585
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
