Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001074A_C01 KMC001074A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177006.1| hypothetical protein; protein id: At1g68390.1 [... 149 3e-35
ref|NP_177522.1| hypothetical protein; protein id: At1g73810.1, ... 128 5e-29
gb|AAL38356.1| unknown protein [Arabidopsis thaliana] gi|2805899... 128 5e-29
ref|NP_196734.1| putative protein; protein id: At5g11730.1, supp... 125 3e-28
ref|NP_197121.1| putative protein; protein id: At5g16170.1 [Arab... 125 4e-28
>ref|NP_177006.1| hypothetical protein; protein id: At1g68390.1 [Arabidopsis
thaliana] gi|25349271|pir||G96707 hypothetical protein
T2E12.6 [imported] - Arabidopsis thaliana
gi|6714352|gb|AAF26043.1|AC015986_6 hypothetical
protein; 24280-21634 [Arabidopsis thaliana]
Length = 408
Score = 149 bits (375), Expect = 3e-35
Identities = 69/119 (57%), Positives = 92/119 (76%), Gaps = 2/119 (1%)
Frame = -3
Query: 543 ALQVVSDRRYFPVFEKYCNPQCYSDEHYLPTLVNIK--FWKRNSNRTLTWVDWTKGGPHP 370
AL+++SDR Y+P+F YC+ CY+DEHY+PTL+NIK +RNSNRTLTWVDW+KGGPHP
Sbjct: 292 ALEIISDRIYWPLFYSYCHHGCYADEHYIPTLLNIKSSLKRRNSNRTLTWVDWSKGGPHP 351
Query: 369 SKYIRTDVTVEFLERLSYGNGTTCEYHGMVTNICHLFARKFTTHALERLLRFAPKLMQF 193
+++IR +VT EF+E L +G C Y+G TNIC+LFARKF AL+RLLR + ++ F
Sbjct: 352 NRFIRHEVTAEFMENLR--SGGECLYNGEETNICYLFARKFLPTALDRLLRLSRTVLHF 408
>ref|NP_177522.1| hypothetical protein; protein id: At1g73810.1, supported by cDNA:
gi_17473868 [Arabidopsis thaliana]
gi|25349273|pir||E96765 hypothetical protein F25P22.23
[imported] - Arabidopsis thaliana
gi|12324202|gb|AAG52068.1|AC012679_6 hypothetical
protein; 83152-80450 [Arabidopsis thaliana]
Length = 418
Score = 128 bits (321), Expect = 5e-29
Identities = 63/117 (53%), Positives = 77/117 (64%)
Frame = -3
Query: 543 ALQVVSDRRYFPVFEKYCNPQCYSDEHYLPTLVNIKFWKRNSNRTLTWVDWTKGGPHPSK 364
AL VVSD YFPVFEKYC CY+DEHYL T V+ F +N+NR+LTW DW++ GPHP K
Sbjct: 303 ALAVVSDTTYFPVFEKYCLWNCYADEHYLSTFVHAMFPGKNANRSLTWTDWSRRGPHPRK 362
Query: 363 YIRTDVTVEFLERLSYGNGTTCEYHGMVTNICHLFARKFTTHALERLLRFAPKLMQF 193
Y R VT EFL R+ C Y+G + C+LFARKF L++LL FA +M F
Sbjct: 363 YTRRSVTGEFLRRVR-NREQGCVYNGKKSEKCYLFARKFDGSTLDKLLYFAHSVMGF 418
>gb|AAL38356.1| unknown protein [Arabidopsis thaliana] gi|28058990|gb|AAO29975.1|
unknown protein [Arabidopsis thaliana]
Length = 418
Score = 128 bits (321), Expect = 5e-29
Identities = 63/117 (53%), Positives = 77/117 (64%)
Frame = -3
Query: 543 ALQVVSDRRYFPVFEKYCNPQCYSDEHYLPTLVNIKFWKRNSNRTLTWVDWTKGGPHPSK 364
AL VVSD YFPVFEKYC CY+DEHYL T V+ F +N+NR+LTW DW++ GPHP K
Sbjct: 303 ALAVVSDTTYFPVFEKYCLWNCYADEHYLSTFVHAMFPGKNANRSLTWTDWSRRGPHPRK 362
Query: 363 YIRTDVTVEFLERLSYGNGTTCEYHGMVTNICHLFARKFTTHALERLLRFAPKLMQF 193
Y R VT EFL R+ C Y+G + C+LFARKF L++LL FA +M F
Sbjct: 363 YTRRSVTGEFLRRVR-NREQGCVYNGKKSEKCYLFARKFDGSTLDKLLYFAHSVMGF 418
>ref|NP_196734.1| putative protein; protein id: At5g11730.1, supported by cDNA:
gi_20260569 [Arabidopsis thaliana]
gi|11281886|pir||T48532 hypothetical protein T22P22.120
- Arabidopsis thaliana gi|7573387|emb|CAB87691.1|
putative protein [Arabidopsis thaliana]
gi|20260570|gb|AAM13183.1| putative protein [Arabidopsis
thaliana]
Length = 386
Score = 125 bits (314), Expect = 3e-28
Identities = 55/117 (47%), Positives = 80/117 (68%)
Frame = -3
Query: 543 ALQVVSDRRYFPVFEKYCNPQCYSDEHYLPTLVNIKFWKRNSNRTLTWVDWTKGGPHPSK 364
A +V D Y+P F+++C P CY DEHY PT++ I+ +NR+LTWVDW++GGPHP+
Sbjct: 272 AATIVKDTLYYPKFKEFCRPACYVDEHYFPTMLTIEKPTVLANRSLTWVDWSRGGPHPAT 331
Query: 363 YIRTDVTVEFLERLSYGNGTTCEYHGMVTNICHLFARKFTTHALERLLRFAPKLMQF 193
+ R+D+T F ++ +G C Y+G T++C+LFARKF ALE LL APK++ F
Sbjct: 332 FGRSDITENFFGKIF--DGRNCSYNGRNTSMCYLFARKFAPSALEPLLHIAPKILGF 386
>ref|NP_197121.1| putative protein; protein id: At5g16170.1 [Arabidopsis thaliana]
gi|11358179|pir||T51487 hypothetical protein T21H19_90 -
Arabidopsis thaliana gi|9755827|emb|CAC01858.1| putative
protein [Arabidopsis thaliana]
Length = 329
Score = 125 bits (313), Expect = 4e-28
Identities = 57/122 (46%), Positives = 81/122 (65%), Gaps = 5/122 (4%)
Frame = -3
Query: 543 ALQVVSDRRYFPVFEKYCNPQCYSDEHYLPTLVNIKFWKRNSNRTLTWVDWTKGGPHPSK 364
AL ++ D Y+ +F+++C P CY DEHY+PTLV++ + ++NRTLTWVDW+K GPHP +
Sbjct: 208 ALHIIEDTVYYKIFDQHCKPPCYMDEHYIPTLVHMLHGEMSANRTLTWVDWSKAGPHPGR 267
Query: 363 YIRTDVTVEFLERLSYGNGTTCEYHG-----MVTNICHLFARKFTTHALERLLRFAPKLM 199
+I D+T EFL R+ + C Y G + T+ C LFARKFT LE LLR +P ++
Sbjct: 268 FIWPDITDEFLNRIRFKE--ECVYFGRGGENVTTSKCFLFARKFTAETLEPLLRISPIVL 325
Query: 198 QF 193
F
Sbjct: 326 GF 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,391,296
Number of Sequences: 1393205
Number of extensions: 9533583
Number of successful extensions: 24185
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 23685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24138
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
