Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001073A_C01 KMC001073A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10521 beta-glucosidase (EC 3.2.1.21) - common nasturtium g... 36 0.36
ref|NP_197594.2| glycosyl hydrolase family 3; protein id: At5g20... 36 0.47
pir||T51283 glucan 1,3-beta-glucosidase (EC 3.2.1.58) [imported]... 35 0.80
gb|AAL58966.1|AC091811_15 putative exoglucanase precursor [Oryza... 34 1.4
gb|AAL58976.1|AC091811_25 putative exohydrolase [Oryza sativa] 34 1.8
>pir||T10521 beta-glucosidase (EC 3.2.1.21) - common nasturtium
gi|3201554|emb|CAA07070.1| beta-D-glucosidase
[Tropaeolum majus]
Length = 654
Score = 36.2 bits (82), Expect = 0.36
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -3
Query: 443 TNLIFTLETGFTGKLARAWFKIVDQL 366
T+++F + GFTGKLAR WFK VDQL
Sbjct: 578 TDVLFG-DYGFTGKLARTWFKTVDQL 602
>ref|NP_197594.2| glycosyl hydrolase family 3; protein id: At5g20940.1, supported by
cDNA: gi_20260199 [Arabidopsis thaliana]
gi|20260200|gb|AAM12998.1| beta-glucosidase-like protein
[Arabidopsis thaliana]
Length = 626
Score = 35.8 bits (81), Expect = 0.47
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3
Query: 416 GFTGKLARAWFKIVDQL 366
GFTGKLAR WFK VDQL
Sbjct: 586 GFTGKLARTWFKTVDQL 602
>pir||T51283 glucan 1,3-beta-glucosidase (EC 3.2.1.58) [imported] - common
tobacco gi|3582436|dbj|BAA33065.1| beta-D-glucan
exohydrolase [Nicotiana tabacum]
Length = 628
Score = 35.0 bits (79), Expect = 0.80
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3
Query: 416 GFTGKLARAWFKIVDQL 366
GFTGKLAR WFK VDQL
Sbjct: 585 GFTGKLARTWFKRVDQL 601
Score = 26.2 bits (56), Expect(2) = 9.3
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 253 NGKKIRANHDRVTGYL 206
NG+K+ AN D VTG+L
Sbjct: 280 NGRKMHANRDLVTGFL 295
Score = 23.9 bits (50), Expect(2) = 9.3
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 339 STSSELSVLMPAYLDSIIKSDSILNIS 259
S++S S+ MPAY DS+ K + + +S
Sbjct: 249 SSNSLFSIHMPAYYDSLRKGVATVMVS 275
>gb|AAL58966.1|AC091811_15 putative exoglucanase precursor [Oryza sativa]
Length = 625
Score = 34.3 bits (77), Expect = 1.4
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = -3
Query: 416 GFTGKLARAWFKIVDQL 366
GFTGKL+R WFK VDQL
Sbjct: 583 GFTGKLSRTWFKSVDQL 599
>gb|AAL58976.1|AC091811_25 putative exohydrolase [Oryza sativa]
Length = 677
Score = 33.9 bits (76), Expect = 1.8
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -3
Query: 443 TNLIFTLETGFTGKLARAWFKIVDQL 366
T+++F + GFTGKL R WFK VDQL
Sbjct: 627 TDVLFG-DYGFTGKLPRTWFKSVDQL 651
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,129,127
Number of Sequences: 1393205
Number of extensions: 9132913
Number of successful extensions: 20417
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20416
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
