Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001071A_C01 KMC001071A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178253.1| ATP-dependent DNA helicase, putative; protein i... 121 7e-27
ref|ZP_00073137.1| hypothetical protein [Trichodesmium erythraeu... 83 2e-15
ref|NP_488829.1| DNA helicase [Nostoc sp. PCC 7120] gi|25290838|... 77 1e-13
gb|ZP_00110653.1| hypothetical protein [Nostoc punctiforme] 76 3e-13
ref|NP_442137.1| DNA recombinase [Synechocystis sp. PCC 6803] gi... 75 8e-13
>ref|NP_178253.1| ATP-dependent DNA helicase, putative; protein id: At2g01440.1
[Arabidopsis thaliana] gi|25410905|pir||G84424 probable
ATP-dependent DNA helicase RECG [imported] - Arabidopsis
thaliana gi|3785974|gb|AAC67321.1| putative ATP-dependent
DNA helicase RECG [Arabidopsis thaliana]
Length = 845
Score = 121 bits (303), Expect = 7e-27
Identities = 57/83 (68%), Positives = 71/83 (84%)
Frame = -2
Query: 574 SKCILVASTASSLNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEV 395
SKC+LV S+ +SL RL +L +SSDGF+LAN+DLLLRGPGDLLGKKQSGHLPEFP+ RLE+
Sbjct: 763 SKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEFPVARLEI 822
Query: 394 DGNILQEAHVAALKILSASHDLE 326
DGN+LQEAH+AAL + + L+
Sbjct: 823 DGNMLQEAHIAALVYIHSPMTLQ 845
>ref|ZP_00073137.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 827
Score = 83.2 bits (204), Expect = 2e-15
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Frame = -2
Query: 574 SKCILV--ASTASSLNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRL 401
S C+L+ A + + RLKVLEQS DGF +A MD+ LRGPG +LG KQSG LP+F + L
Sbjct: 721 SYCLLMRGAGSTDATERLKVLEQSQDGFFIAEMDMRLRGPGQVLGTKQSG-LPDFALASL 779
Query: 400 EVDGNILQEAHVAALKILSASHDLERFPALKRELSMR 290
D +L+ A AAL+++ L +P L++EL R
Sbjct: 780 VEDQEVLELARGAALQVMEKDESLNSWPLLRKELEWR 816
>ref|NP_488829.1| DNA helicase [Nostoc sp. PCC 7120] gi|25290838|pir||AE2404 DNA
helicase [imported] - Nostoc sp. (strain PCC 7120)
gi|17133926|dbj|BAB76488.1| DNA helicase [Nostoc sp. PCC
7120]
Length = 822
Score = 77.4 bits (189), Expect = 1e-13
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Frame = -2
Query: 574 SKCILVASTAS--SLNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRL 401
S C+L++S+ S + RLKVLEQS DGF ++ MD+ RGPG++LG +QSG +P+F + L
Sbjct: 716 SYCLLMSSSRSPDAQQRLKVLEQSQDGFFISEMDMRFRGPGEVLGTRQSG-VPDFTLASL 774
Query: 400 EVDGNILQEAHVAALKILSASHDLERFPALKRELSMR 290
D +L A AA K++ LER+ +K EL R
Sbjct: 775 VEDEEVLLLARQAAEKVIEIDASLERWALMKAELKYR 811
>gb|ZP_00110653.1| hypothetical protein [Nostoc punctiforme]
Length = 831
Score = 75.9 bits (185), Expect = 3e-13
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = -2
Query: 574 SKCILVASTAS--SLNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRL 401
S C+L++S+ S + RLKVLEQS DGF ++ MD+ RGPG +LG +QSG +P+F + L
Sbjct: 725 SYCLLMSSSRSPDAQQRLKVLEQSQDGFFISEMDMRFRGPGQVLGTRQSG-VPDFTLASL 783
Query: 400 EVDGNILQEAHVAALKILSASHDLERFPALKRELSMR 290
D +L A AA KI+ LER+ +K EL R
Sbjct: 784 VEDEEVLLLARQAAEKIIEMDVTLERWYLIKEELKYR 820
>ref|NP_442137.1| DNA recombinase [Synechocystis sp. PCC 6803]
gi|3914638|sp|Q55681|RECG_SYNY3 ATP-dependent DNA
helicase recG gi|7428322|pir||S76355 DNA helicase recG -
Synechocystis sp. (strain PCC 6803)
gi|1001580|dbj|BAA10207.1| DNA recombinase [Synechocystis
sp. PCC 6803]
Length = 831
Score = 74.7 bits (182), Expect = 8e-13
Identities = 48/108 (44%), Positives = 64/108 (58%), Gaps = 2/108 (1%)
Frame = -2
Query: 574 SKCILVASTASS--LNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRL 401
S C+LV ++ S+ RL V+EQS DGF +A MDL LRGPG+ LG KQSG LP+F + L
Sbjct: 725 SYCLLVTNSKSNDARQRLGVMEQSQDGFFIAEMDLRLRGPGEFLGTKQSG-LPDFALASL 783
Query: 400 EVDGNILQEAHVAALKILSASHDLERFPALKRELSMRQPLCLLGD*LS 257
D +L A AA ++ +LE P LK +L R L G+ L+
Sbjct: 784 VEDQEVLLLAREAAETMMVEDPNLEAHPDLKIKLVQRYEKLLGGEILT 831
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,388,914
Number of Sequences: 1393205
Number of extensions: 9889679
Number of successful extensions: 21284
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 20745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21271
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
