Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001066A_C01 KMC001066A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200237.1| DNA repair and meiosis protein Mre11 (emb|CAB50... 317 2e-85
sp|Q9W6K1|MR11_XENLA Double-strand break repair protein MRE11 gi... 197 1e-49
ref|NP_061206.1| meiotic recombination 11 homolog A [Mus musculu... 196 3e-49
dbj|BAC30878.1| unnamed protein product [Mus musculus] 196 3e-49
gb|AAB03664.1| Mre11b 196 3e-49
>ref|NP_200237.1| DNA repair and meiosis protein Mre11 (emb|CAB50793.1); protein id:
At5g54260.1, supported by cDNA: gi_5524768 [Arabidopsis
thaliana] gi|17380154|sp|Q9XGM2|MR11_ARATH Double-strand
break repair protein MRE11 gi|25288917|pir||T52564 Mre11
protein homolog [imported] - Arabidopsis thaliana
gi|5524769|emb|CAB50793.1| Mre11 protein [Arabidopsis
thaliana] gi|9759499|dbj|BAB10749.1| DNA repair and
meiosis protein Mre11 [Arabidopsis thaliana]
Length = 720
Score = 317 bits (811), Expect = 2e-85
Identities = 149/173 (86%), Positives = 164/173 (94%)
Frame = +3
Query: 285 MAEAEATDTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFH 464
M+ + +DTLR+LVATDCHLGYMEKDE+RRHDSF+AFEEICSIAEEKQVDF+LLGGDLFH
Sbjct: 1 MSREDFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFH 60
Query: 465 ENKPTRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQNTFGHVNYEDPHFNVGLPVFT 644
ENKP+R+TLVKAIEILRR+CLND+PV FQVVSDQT+NFQN FG VNYEDPHFNVGLPVF+
Sbjct: 61 ENKPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFS 120
Query: 645 IHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLNPILIKKGS 803
IHGNHDDPAGVDNLS +DILSACNLVNYFGK VLGGSGVGQITL PIL+KKGS
Sbjct: 121 IHGNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGS 173
>sp|Q9W6K1|MR11_XENLA Double-strand break repair protein MRE11
gi|4884904|gb|AAD31866.1|AF134569_1 putative nuclease
Mre11 [Xenopus laevis]
Length = 711
Score = 197 bits (501), Expect = 1e-49
Identities = 93/175 (53%), Positives = 132/175 (75%), Gaps = 1/175 (0%)
Frame = +3
Query: 279 ASMAEAEATDTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDL 458
+S + + DT +ILVATD HLG+MEKD VR +DSF AF+EI +A++ +VDF+LLGGDL
Sbjct: 3 SSSSSLDDEDTFKILVATDIHLGFMEKDAVRGNDSFVAFDEILRLAQDNEVDFLLLGGDL 62
Query: 459 FHENKPTRSTLVKAIEILRRYCLNDRPVPFQVVSDQTLNF-QNTFGHVNYEDPHFNVGLP 635
FH+NKP+R TL +E LR+YC+ DRP+ F+V+SDQ++NF + F VNY+D + N+ LP
Sbjct: 63 FHDNKPSRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYSKFPWVNYQDNNLNISLP 122
Query: 636 VFTIHGNHDDPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLNPILIKKG 800
VF++HGNHDDP G D L +DILS+ LVN+FG+ + V +I ++P+L++KG
Sbjct: 123 VFSVHGNHDDPTGADALCALDILSSAGLVNHFGR----ATSVEKIDISPVLLQKG 173
>ref|NP_061206.1| meiotic recombination 11 homolog A [Mus musculus]
gi|18202590|sp|Q61216|MR11_MOUSE Double-strand break
repair protein MRE11A (MRE11 homolog 1) (MmMRE11A)
gi|1388175|gb|AAB04955.1| endo/exonuclease Mre11
Length = 706
Score = 196 bits (499), Expect = 3e-49
Identities = 91/167 (54%), Positives = 127/167 (75%), Gaps = 1/167 (0%)
Frame = +3
Query: 306 DTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFHENKPTRS 485
DT +ILVATD HLG+MEKD VR +D+F F+EI +A E +VDF+LLGGDLFHENKP+R
Sbjct: 11 DTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKPSRK 70
Query: 486 TLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQ-NTFGHVNYEDPHFNVGLPVFTIHGNHD 662
TL +E+LR+YC+ DRPV F+V+SDQ++NF + F VNY+D + N+ +PVF+IHGNHD
Sbjct: 71 TLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHD 130
Query: 663 DPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLNPILIKKGS 803
DP G D L +D+LS VN+FG+++ V ++ ++P+L++KGS
Sbjct: 131 DPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGS 173
>dbj|BAC30878.1| unnamed protein product [Mus musculus]
Length = 513
Score = 196 bits (499), Expect = 3e-49
Identities = 91/167 (54%), Positives = 127/167 (75%), Gaps = 1/167 (0%)
Frame = +3
Query: 306 DTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFHENKPTRS 485
DT +ILVATD HLG+MEKD VR +D+F F+EI +A E +VDF+LLGGDLFHENKP+R
Sbjct: 11 DTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKPSRK 70
Query: 486 TLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQ-NTFGHVNYEDPHFNVGLPVFTIHGNHD 662
TL +E+LR+YC+ DRPV F+V+SDQ++NF + F VNY+D + N+ +PVF+IHGNHD
Sbjct: 71 TLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHD 130
Query: 663 DPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLNPILIKKGS 803
DP G D L +D+LS VN+FG+++ V ++ ++P+L++KGS
Sbjct: 131 DPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGS 173
>gb|AAB03664.1| Mre11b
Length = 679
Score = 196 bits (499), Expect = 3e-49
Identities = 91/167 (54%), Positives = 127/167 (75%), Gaps = 1/167 (0%)
Frame = +3
Query: 306 DTLRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEEKQVDFMLLGGDLFHENKPTRS 485
DT +ILVATD HLG+MEKD VR +D+F F+EI +A E +VDF+LLGGDLFHENKP+R
Sbjct: 11 DTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKPSRK 70
Query: 486 TLVKAIEILRRYCLNDRPVPFQVVSDQTLNFQ-NTFGHVNYEDPHFNVGLPVFTIHGNHD 662
TL +E+LR+YC+ DRPV F+V+SDQ++NF + F VNY+D + N+ +PVF+IHGNHD
Sbjct: 71 TLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHD 130
Query: 663 DPAGVDNLSVVDILSACNLVNYFGKTVLGGSGVGQITLNPILIKKGS 803
DP G D L +D+LS VN+FG+++ V ++ ++P+L++KGS
Sbjct: 131 DPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGS 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 694,581,669
Number of Sequences: 1393205
Number of extensions: 15750945
Number of successful extensions: 46164
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 43308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46030
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
