Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001063A_C01 KMC001063A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; ... 292 2e-78
gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like pr... 283 9e-76
ref|NP_059506.1| coatomer protein complex, subunit gamma 2 [Mus ... 191 6e-48
dbj|BAC40387.1| unnamed protein product [Mus musculus] 191 6e-48
ref|NP_036265.1| coatomer protein complex, subunit gamma 2; coat... 190 1e-47
>ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; protein id:
At4g34450.1 [Arabidopsis thaliana]
gi|7484873|pir||T05265 coat protein gamma-COP homolog
T4L20.30 - Arabidopsis thaliana
gi|3641837|emb|CAA18824.1| Nonclathrin coat protein
gamma-like protein [Arabidopsis thaliana]
gi|7270395|emb|CAB80162.1| Nonclathrin coat protein
gamma-like protein [Arabidopsis thaliana]
Length = 831
Score = 292 bits (748), Expect = 2e-78
Identities = 149/164 (90%), Positives = 157/164 (94%)
Frame = +2
Query: 113 MAQPLVKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 292
MAQPLVKKDDD DDE +YSPF+GIEKGAVLQEARVFNDPQ+D RRCSQVITKLLYLLNQG
Sbjct: 1 MAQPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQG 60
Query: 293 ESFTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTD 472
ESFTKVEATEVFF+VTKLFQS+D GLRRMVYL+IKELSP +DEVIIVTSSLMKDMNSK D
Sbjct: 61 ESFTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKID 120
Query: 473 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVS 604
MYRANAIRVLCRI DGTLLTQIERYLKQAIVDKNPVV+SAALVS
Sbjct: 121 MYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVS 164
>gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like protein [Oryza
sativa (japonica cultivar-group)]
Length = 826
Score = 283 bits (725), Expect = 9e-76
Identities = 146/164 (89%), Positives = 156/164 (95%)
Frame = +2
Query: 113 MAQPLVKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQG 292
MAQP +KKDDD D++ +YSPF GIEKGAVLQEAR F+DPQLDAR+CSQVITKLLYLLNQG
Sbjct: 1 MAQPYMKKDDD-DEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQG 59
Query: 293 ESFTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTD 472
E+FTKVEATEVFFAVTKLFQS+D GLRR+VYLMIKELSP +DEVIIVTSSLMKDMNSKTD
Sbjct: 60 ETFTKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTD 119
Query: 473 MYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVS 604
MYRANAIRVLCRI DGTLLTQIERYLKQAIVDKNPVVASAALVS
Sbjct: 120 MYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVS 163
>ref|NP_059506.1| coatomer protein complex, subunit gamma 2 [Mus musculus]
gi|13124084|sp|Q9QXK3|CPG2_MOUSE Coatomer gamma-2
subunit (Gamma-2 coat protein) (Gamma-2 COP)
gi|6573256|gb|AAF17607.1|AF205065_1 coatomer protein
gamma2-COP [Mus musculus] gi|8919670|emb|CAB96146.1|
coatomer protein gamma 2-subunit [Mus musculus]
gi|29165813|gb|AAH49178.1| coatomer protein complex,
subunit gamma 2 [Mus musculus]
Length = 871
Score = 191 bits (485), Expect = 6e-48
Identities = 98/162 (60%), Positives = 125/162 (76%), Gaps = 2/162 (1%)
Frame = +2
Query: 125 LVKKDDDRDDEADY--SPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGES 298
++KK D +D+E+ +PF +EK AVLQEAR+FN+ ++ RRC ++TK+LYLLNQGE
Sbjct: 1 MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEH 60
Query: 299 FTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTDMY 478
F +EATE FFA+T+LFQS D LRRM YL IKE++ +++VIIVTSSL KDM K D+Y
Sbjct: 61 FGTMEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVY 120
Query: 479 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVS 604
R AIR LCRITDGT+L +ERY+KQAIVDK VAS+ALVS
Sbjct: 121 RGPAIRALCRITDGTMLQAVERYMKQAIVDKVSSVASSALVS 162
>dbj|BAC40387.1| unnamed protein product [Mus musculus]
Length = 870
Score = 191 bits (485), Expect = 6e-48
Identities = 98/162 (60%), Positives = 125/162 (76%), Gaps = 2/162 (1%)
Frame = +2
Query: 125 LVKKDDDRDDEADY--SPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGES 298
++KK D +D+E+ +PF +EK AVLQEAR+FN+ ++ RRC ++TK+LYLLNQGE
Sbjct: 1 MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEH 60
Query: 299 FTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTDMY 478
F +EATE FFA+T+LFQS D LRRM YL IKE++ +++VIIVTSSL KDM K D+Y
Sbjct: 61 FGTMEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVY 120
Query: 479 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVS 604
R AIR LCRITDGT+L +ERY+KQAIVDK VAS+ALVS
Sbjct: 121 RGPAIRALCRITDGTMLQAVERYMKQAIVDKVSSVASSALVS 162
>ref|NP_036265.1| coatomer protein complex, subunit gamma 2; coat protein,
nonclathrin, gamma-2-cop [Homo sapiens]
gi|13124090|sp|Q9UBF2|CPG2_HUMAN Coatomer gamma-2
subunit (Gamma-2 coat protein) (Gamma-2 COP)
gi|6492310|gb|AAF14271.1|AF157833_1 nonclathrin coat
protein gamma2-COP [Homo sapiens]
gi|6625948|gb|AAF19433.1|AF207598_1 coat protein
gamma2-COP [Homo sapiens] gi|11094285|dbj|BAB17658.1|
gamma2-COP [Homo sapiens]
Length = 871
Score = 190 bits (482), Expect = 1e-47
Identities = 98/162 (60%), Positives = 124/162 (76%), Gaps = 2/162 (1%)
Frame = +2
Query: 125 LVKKDDDRDDEADY--SPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGES 298
++KK D +D+E+ +PF +EK AVLQEAR+FN+ ++ RRC ++TK+LYLLNQGE
Sbjct: 1 MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEH 60
Query: 299 FTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTDMY 478
F EATE FFA+T+LFQS D LRRM YL IKE++ +++VIIVTSSL KDM K D+Y
Sbjct: 61 FGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVY 120
Query: 479 RANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVS 604
R AIR LCRITDGT+L IERY+KQAIVDK V+S+ALVS
Sbjct: 121 RGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVS 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,836,463
Number of Sequences: 1393205
Number of extensions: 10579394
Number of successful extensions: 29405
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 28054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29325
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
