Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001059A_C01 KMC001059A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40929.1| OSJNBa0033G16.8 [Oryza sativa (japonica cultivar... 133 1e-30
ref|NP_187773.1| digalactosyldiacylglycerol synthase; protein id... 132 2e-30
gb|AAO16600.1| digalactosyldiacylglycerol synthase [Xerophyta hu... 127 7e-29
gb|AAL60505.1|AF421194_1 digalactosyldiacylglycerol synthase [Ar... 35 0.38
pir||T01219 hypothetical protein F6N23.24 - Arabidopsis thaliana... 35 0.38
>emb|CAD40929.1| OSJNBa0033G16.8 [Oryza sativa (japonica cultivar-group)]
Length = 775
Score = 133 bits (335), Expect = 1e-30
Identities = 64/94 (68%), Positives = 72/94 (76%)
Frame = -1
Query: 507 RFMEYSELDKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNEFLR 328
RFMEYSELDKVLN K G R + K +P L+E+VDGGLAFAH+CLTGNE LR
Sbjct: 683 RFMEYSELDKVLNN-KIGYSGQDGKRSKVRKIPLLPRLSEVVDGGLAFAHHCLTGNEILR 741
Query: 327 LCTGATPGTRDYDKQHCKDLNLLPPQVENPIYGW 226
L TGA PGTRDYDKQ C DLNLLPPQV++P+YGW
Sbjct: 742 LATGAIPGTRDYDKQQCMDLNLLPPQVQHPVYGW 775
>ref|NP_187773.1| digalactosyldiacylglycerol synthase; protein id: At3g11670.1,
supported by cDNA: gi_18700088, supported by cDNA:
gi_20855997, supported by cDNA: gi_5354157 [Arabidopsis
thaliana] gi|5354158|gb|AAD42378.1|AF149841_1
digalactosyldiacylglycerol synthase [Arabidopsis
thaliana] gi|5354160|gb|AAD42379.1|AF149842_1
digalactosyldiacylglycerol synthase [Arabidopsis
thaliana] gi|6041825|gb|AAF02140.1|AC009918_12
digalactosyldiacylglycerol synthase [Arabidopsis
thaliana] gi|18700089|gb|AAL77656.1| AT3g11670/T19F11_7
[Arabidopsis thaliana] gi|20855998|gb|AAM26642.1|
AT3g11670/T19F11_7 [Arabidopsis thaliana]
Length = 808
Score = 132 bits (332), Expect = 2e-30
Identities = 61/94 (64%), Positives = 72/94 (75%)
Frame = -1
Query: 507 RFMEYSELDKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNEFLR 328
RFMEYS+LDK+LN + G K M KS S+P+ E+VDGGLAF+HY LTGN+FLR
Sbjct: 723 RFMEYSDLDKILNNGEGGRK--------MRKSRSVPSFNEVVDGGLAFSHYVLTGNDFLR 774
Query: 327 LCTGATPGTRDYDKQHCKDLNLLPPQVENPIYGW 226
LCTGATP T+DYD QHCKDLNL+PP V PI+GW
Sbjct: 775 LCTGATPRTKDYDNQHCKDLNLVPPHVHKPIFGW 808
>gb|AAO16600.1| digalactosyldiacylglycerol synthase [Xerophyta humilis]
Length = 465
Score = 127 bits (319), Expect = 7e-29
Identities = 62/94 (65%), Positives = 74/94 (77%)
Frame = -1
Query: 507 RFMEYSELDKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNEFLR 328
RFMEYSEL+K + + A+ S + KS SMP+L+E+VDGGLAFAHYCLTGNE LR
Sbjct: 374 RFMEYSELNK--DCKIAVAQNSMQKTLRIKKSVSMPSLSEVVDGGLAFAHYCLTGNEVLR 431
Query: 327 LCTGATPGTRDYDKQHCKDLNLLPPQVENPIYGW 226
L TGA PGTRDYD HCKDL+LLPPQV++P+YGW
Sbjct: 432 LATGAIPGTRDYDMPHCKDLHLLPPQVQHPVYGW 465
>gb|AAL60505.1|AF421194_1 digalactosyldiacylglycerol synthase [Arabidopsis thaliana]
Length = 235
Score = 35.4 bits (80), Expect = 0.38
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = -1
Query: 507 RFMEYSELDKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNEFLR 328
RF++ S+L+++ + + +K R + A S+ ++ + ++ A+ H+ +G E R
Sbjct: 148 RFIKVSDLNRLSRADSNLSK-----RSVFASSSI--SVGKNLEDMSAYIHFLASGFEASR 200
Query: 327 LCTGATPGTRDYDKQHCKDLNL 262
GA PG+ D++ C+DL L
Sbjct: 201 TAFGAIPGSLQPDEELCRDLGL 222
>pir||T01219 hypothetical protein F6N23.24 - Arabidopsis thaliana
gi|3047114|gb|AAC13625.1| F6N23.24 gene product
[Arabidopsis thaliana] gi|7267394|emb|CAB80864.1|
predicted protein of unknown function [Arabidopsis
thaliana]
Length = 389
Score = 35.4 bits (80), Expect = 0.38
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = -1
Query: 507 RFMEYSELDKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNEFLR 328
RF++ S+L+++ + + +K R + A S+ ++ + ++ A+ H+ +G E R
Sbjct: 302 RFIKVSDLNRLSRADSNLSK-----RSVFASSSI--SVGKNLEDMSAYIHFLASGFEASR 354
Query: 327 LCTGATPGTRDYDKQHCKDLNL 262
GA PG+ D++ C+DL L
Sbjct: 355 TAFGAIPGSLQPDEELCRDLGL 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,085,263
Number of Sequences: 1393205
Number of extensions: 8090078
Number of successful extensions: 18117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18091
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
