Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001058A_C01 KMC001058A_c01
(376 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_212030.1| hypothetical protein XP_212030 [Homo sapiens] 32 2.0
ref|NP_059577.1| NADH dehydrogenase subunit 5 [Sciurus vulgaris]... 30 7.5
ref|NP_341996.1| Conserved hypothetical protein [Sulfolobus solf... 30 7.5
ref|NP_782017.1| hypothetical protein [Clostridium tetani E88] g... 30 9.8
ref|NP_733851.1| C7 [Callitrichine herpesvirus 3] gi|24762310|gb... 30 9.8
>ref|XP_212030.1| hypothetical protein XP_212030 [Homo sapiens]
Length = 90
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 308 RKQVLLLDRCDVIFLVGLLKSHILNNYYYYYDKWPNLMFLRGFAF 174
R++V L RC ++ + K + + Y + Y WPN+ FL F
Sbjct: 2 RRRVFFLHRCSILVFLFPCKCNQMPFYMWTYLYWPNIFFLLSLFF 46
>ref|NP_059577.1| NADH dehydrogenase subunit 5 [Sciurus vulgaris]
gi|8347079|emb|CAB93995.1| NADH dehydrogenase subunit 5
[Sciurus vulgaris]
Length = 605
Score = 30.0 bits (66), Expect = 7.5
Identities = 16/48 (33%), Positives = 24/48 (49%)
Frame = -1
Query: 280 VMLFFLLGY*SHIFLTIIIIIMISGLT*CFLEALHFLLLQWPLLICNW 137
+ L F Y SH F + ++ LT C L +L F+ + L+I NW
Sbjct: 19 IFLSFTNFYNSHTFPNYVKTSIMCALTFCTLPSLMFINYNYELVISNW 66
>ref|NP_341996.1| Conserved hypothetical protein [Sulfolobus solfataricus]
gi|25394692|pir||C90191 conserved hypothetical protein
[imported] - Sulfolobus solfataricus
gi|13813618|gb|AAK40786.1| Conserved hypothetical
protein [Sulfolobus solfataricus]
Length = 214
Score = 30.0 bits (66), Expect = 7.5
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -3
Query: 371 HCLPLKKLLIDTRKQIMITCGRKQVLLLDRCDVIFLVGLLKSHILNNYYYYYDKWPNLMF 192
HC+ ++ + I G L+ + F+VGLL + I + YY ++ L+
Sbjct: 12 HCIRTNISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVI 71
Query: 191 LRGFAFLITSMAVTNL*LGNLLNF 120
++ L TS+ +TN + + NF
Sbjct: 72 KGYYSELFTSIFITNSFVDFIFNF 95
>ref|NP_782017.1| hypothetical protein [Clostridium tetani E88]
gi|28203512|gb|AAO35954.1| hypothetical protein
[Clostridium tetani E88]
Length = 213
Score = 29.6 bits (65), Expect = 9.8
Identities = 17/62 (27%), Positives = 28/62 (44%)
Frame = -3
Query: 356 KKLLIDTRKQIMITCGRKQVLLLDRCDVIFLVGLLKSHILNNYYYYYDKWPNLMFLRGFA 177
KKL K I+I + V L CD+ +++G+ N Y+ ++ + GF
Sbjct: 144 KKLSTKRIKNILIISTNRDVFLKFACDLEYMIGMEDDEEYNFDYHVHEDFIGTSEYNGFN 203
Query: 176 FL 171
FL
Sbjct: 204 FL 205
>ref|NP_733851.1| C7 [Callitrichine herpesvirus 3] gi|24762310|gb|AAN64290.1| C7
[callitrichine herpesvirus 3]
Length = 413
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 298 SCCWIGVMLFFLLGY*SHIFLTIIIIIMISGLT*CFLEALHFLLLQWPLLICNWGI 131
S WI +L FL+G+ ++I + A+ FL+L W LLI NW +
Sbjct: 22 SLFWICSLLTFLVGHGANI-----------------VSAVLFLVLAWCLLIANWNV 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,027,598
Number of Sequences: 1393205
Number of extensions: 4814122
Number of successful extensions: 10444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10424
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
