Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001053A_C01 KMC001053A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199146.1| casein kinase I; protein id: At5g43320.1, suppo... 40 0.024
emb|CAA55397.1| casein kinase I [Arabidopsis thaliana] 40 0.024
gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana] 39 0.042
ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, suppo... 39 0.042
ref|XP_238824.1| hypothetical protein XP_238824 [Rattus norvegicus] 34 1.3
>ref|NP_199146.1| casein kinase I; protein id: At5g43320.1, supported by cDNA:
gi_13430689, supported by cDNA: gi_14532893 [Arabidopsis
thaliana] gi|8843885|dbj|BAA97411.1| casein kinase I
[Arabidopsis thaliana]
gi|13430690|gb|AAK25967.1|AF360257_1 putative casein
kinase I [Arabidopsis thaliana]
gi|14532894|gb|AAK64129.1| putative casein kinase I
[Arabidopsis thaliana]
Length = 480
Score = 40.0 bits (92), Expect = 0.024
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -1
Query: 613 SKTSFTRASGTRGGRDDTLRSFELLSIGTGTGK 515
S +SFTRA+ +R RD TL+SFELL+IG G K
Sbjct: 448 SSSSFTRAAPSRTARDITLQSFELLTIGNGKRK 480
>emb|CAA55397.1| casein kinase I [Arabidopsis thaliana]
Length = 364
Score = 40.0 bits (92), Expect = 0.024
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -1
Query: 613 SKTSFTRASGTRGGRDDTLRSFELLSIGTGTGK 515
S +SFTRA+ +R RD TL+SFELL+IG G K
Sbjct: 332 SSSSFTRAAPSRTARDITLQSFELLTIGNGKRK 364
>gb|AAL58949.1|AF462864_1 AT5g44100/MLN1_2 [Arabidopsis thaliana]
Length = 476
Score = 39.3 bits (90), Expect = 0.042
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -1
Query: 622 GFESKT-SFTRASGTRGGRDDTLRSFELLSI 533
G+ESKT SF+RA+ R R+D LRSFELLS+
Sbjct: 444 GYESKTLSFSRATAARNTREDQLRSFELLSL 474
>ref|NP_199223.1| casein kinase I; protein id: At5g44100.1, supported by cDNA:
gi_18087639 [Arabidopsis thaliana]
gi|9759511|dbj|BAB10977.1| casein kinase I [Arabidopsis
thaliana]
Length = 476
Score = 39.3 bits (90), Expect = 0.042
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -1
Query: 622 GFESKT-SFTRASGTRGGRDDTLRSFELLSI 533
G+ESKT SF+RA+ R R+D LRSFELLS+
Sbjct: 444 GYESKTLSFSRATAARNTREDQLRSFELLSL 474
>ref|XP_238824.1| hypothetical protein XP_238824 [Rattus norvegicus]
Length = 686
Score = 34.3 bits (77), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (60%)
Frame = -2
Query: 579 GVVVMIHSGALNSCQLAQEQEKGNEEPCGLKTSLCV 472
G VV++H+G L SC LA + E P +TSLCV
Sbjct: 340 GEVVVVHTGCLPSCHLANQLSDRTERP--TRTSLCV 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,851,173
Number of Sequences: 1393205
Number of extensions: 11704356
Number of successful extensions: 26694
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26693
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
