Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001050A_C01 KMC001050A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00842 probable histidine kinase [imported] - Arabidopsis t... 139 3e-32
pir||T08856 hypothetical protein A_TM017A05.5 - Arabidopsis thal... 139 3e-32
ref|NP_565424.1| putative histidine kinase; protein id: At2g1782... 139 3e-32
pir||T52459 sensory transduction histidine kinase 1 [validated] ... 139 3e-32
ref|ZP_00060561.1| hypothetical protein [Clostridium thermocellu... 87 1e-16
>pir||T00842 probable histidine kinase [imported] - Arabidopsis thaliana
Length = 1190
Score = 139 bits (349), Expect = 3e-32
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = -3
Query: 505 PYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYL 326
PYDLILMDCQMPKMDGYEATKAIR++E GT LHIPIVALTAHAMS DEA+CL+VGMDAYL
Sbjct: 1103 PYDLILMDCQMPKMDGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYL 1162
Query: 325 TKPIDFKKMVSTIISLTK 272
TKPID K MVSTI+SLTK
Sbjct: 1163 TKPIDRKLMVSTILSLTK 1180
>pir||T08856 hypothetical protein A_TM017A05.5 - Arabidopsis thaliana
Length = 648
Score = 139 bits (349), Expect = 3e-32
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = -3
Query: 505 PYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYL 326
PYDLILMDCQMPKMDGYEATKAIR++E GT LHIPIVALTAHAMS DEA+CL+VGMDAYL
Sbjct: 561 PYDLILMDCQMPKMDGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYL 620
Query: 325 TKPIDFKKMVSTIISLTK 272
TKPID K MVSTI+SLTK
Sbjct: 621 TKPIDRKLMVSTILSLTK 638
>ref|NP_565424.1| putative histidine kinase; protein id: At2g17820.1 [Arabidopsis
thaliana]
Length = 1207
Score = 139 bits (349), Expect = 3e-32
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = -3
Query: 505 PYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYL 326
PYDLILMDCQMPKMDGYEATKAIR++E GT LHIPIVALTAHAMS DEA+CL+VGMDAYL
Sbjct: 1120 PYDLILMDCQMPKMDGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYL 1179
Query: 325 TKPIDFKKMVSTIISLTK 272
TKPID K MVSTI+SLTK
Sbjct: 1180 TKPIDRKLMVSTILSLTK 1197
>pir||T52459 sensory transduction histidine kinase 1 [validated] - Arabidopsis
thaliana gi|4586626|dbj|BAA32085.1| histidine kinase 1
[Arabidopsis thaliana]
Length = 1207
Score = 139 bits (349), Expect = 3e-32
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = -3
Query: 505 PYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMDAYL 326
PYDLILMDCQMPKMDGYEATKAIR++E GT LHIPIVALTAHAMS DEA+CL+VGMDAYL
Sbjct: 1120 PYDLILMDCQMPKMDGYEATKAIRRAEIGTELHIPIVALTAHAMSSDEAKCLEVGMDAYL 1179
Query: 325 TKPIDFKKMVSTIISLTK 272
TKPID K MVSTI+SLTK
Sbjct: 1180 TKPIDRKLMVSTILSLTK 1197
>ref|ZP_00060561.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 902
Score = 87.0 bits (214), Expect = 1e-16
Identities = 42/78 (53%), Positives = 54/78 (68%)
Frame = -3
Query: 520 IFSCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVG 341
+F + +DLILMD QMP+MDG EATK IRK EEGT HIPI+A+TA A D + L+ G
Sbjct: 703 LFEENEFDLILMDVQMPEMDGIEATKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAG 762
Query: 340 MDAYLTKPIDFKKMVSTI 287
MD Y++KP F + + I
Sbjct: 763 MDDYISKPFSFDDIYAAI 780
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,310,820
Number of Sequences: 1393205
Number of extensions: 10764906
Number of successful extensions: 26721
Number of sequences better than 10.0: 3628
Number of HSP's better than 10.0 without gapping: 24070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24667
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
