Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001049A_C01 KMC001049A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194378.1| KH domain protein; protein id: At4g26480.1 [Ara... 54 2e-06
gb|AAL87326.1| putative RNA-binding protein [Arabidopsis thaliana] 53 3e-06
ref|NP_200425.1| KH domain protein; protein id: At5g56140.1 [Ara... 53 3e-06
gb|AAM14070.1| unknown protein [Arabidopsis thaliana] 51 1e-05
dbj|BAB90170.1| P0408G07.16 [Oryza sativa (japonica cultivar-gro... 35 0.95
>ref|NP_194378.1| KH domain protein; protein id: At4g26480.1 [Arabidopsis thaliana]
gi|7486790|pir||T05056 hypothetical protein M3E9.90 -
Arabidopsis thaliana gi|2982458|emb|CAA18222.1| putative
protein [Arabidopsis thaliana]
gi|7269500|emb|CAB79503.1| putative protein [Arabidopsis
thaliana]
Length = 555
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = -2
Query: 597 GTLREEGSPMSGSVSPFHNSLGMKRAKTRG 508
G+LREEGSPMSGS+SP+ NSLGMKRAKTRG
Sbjct: 527 GSLREEGSPMSGSISPY-NSLGMKRAKTRG 555
>gb|AAL87326.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 260
Score = 53.1 bits (126), Expect = 3e-06
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2
Query: 597 GTLREEGSPMSGSVSPFHNSLGMKRAKTR 511
GTLREEGSPMSGSVSP+ NSLGMKRAKTR
Sbjct: 231 GTLREEGSPMSGSVSPY-NSLGMKRAKTR 258
>ref|NP_200425.1| KH domain protein; protein id: At5g56140.1 [Arabidopsis thaliana]
gi|9758634|dbj|BAB09296.1| RNA-binding protein-like
[Arabidopsis thaliana] gi|24030184|gb|AAN41273.1|
putative RNA-binding protein [Arabidopsis thaliana]
Length = 315
Score = 53.1 bits (126), Expect = 3e-06
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2
Query: 597 GTLREEGSPMSGSVSPFHNSLGMKRAKTR 511
GTLREEGSPMSGSVSP+ NSLGMKRAKTR
Sbjct: 286 GTLREEGSPMSGSVSPY-NSLGMKRAKTR 313
>gb|AAM14070.1| unknown protein [Arabidopsis thaliana]
Length = 308
Score = 51.2 bits (121), Expect = 1e-05
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -2
Query: 597 GTLREEGSPMSGSVSPFHNSLGMKRAKTR 511
G+LREEGSPMSGS+SP+ NSLGMKRAKTR
Sbjct: 280 GSLREEGSPMSGSISPY-NSLGMKRAKTR 307
>dbj|BAB90170.1| P0408G07.16 [Oryza sativa (japonica cultivar-group)]
gi|21328045|dbj|BAC00630.1| P0434C04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 245
Score = 34.7 bits (78), Expect = 0.95
Identities = 23/30 (76%), Positives = 24/30 (79%), Gaps = 2/30 (6%)
Frame = -2
Query: 597 GTLREEG-SP-MSGSVSPFHNSLGMKRAKT 514
GTLREE SP +S SVSPF NS GMKRAKT
Sbjct: 215 GTLREESPSPHLSPSVSPF-NSTGMKRAKT 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,419,329
Number of Sequences: 1393205
Number of extensions: 12257151
Number of successful extensions: 29395
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29354
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
