Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001042A_C01 KMC001042A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180125.1| putative non-LTR retroelement reverse transcrip... 37 0.001
ref|NP_187562.1| putative non-LTR reverse transcriptase; protein... 37 0.001
ref|NP_180710.1| putative non-LTR retroelement reverse transcrip... 37 0.011
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 32 0.018
ref|NP_179156.1| putative non-LTR retroelement reverse transcrip... 32 0.039
>ref|NP_180125.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g25550.1 [Arabidopsis thaliana]
gi|25412331|pir||G84649 hypothetical protein At2g25550
[imported] - Arabidopsis thaliana
gi|4432866|gb|AAD20714.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1750
Score = 36.6 bits (83), Expect(2) = 0.001
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Frame = -1
Query: 356 VDHLLSFAGLFLLAQKDGILSVWLAVVWHVWVGRNEAVFREGVFLPECIFYLVKLKVWEW 177
+ ++L+F ++ +L VWL +W +W RN VF + P K + +W
Sbjct: 1511 ISNILNFVQDTTMSDFHKLLPVWL--IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW 1568
Query: 176 LKARSCH---------FTHATYEWFNEP 120
L A H EW N P
Sbjct: 1569 LNATQSHKKTPSPTRQIAENKIEWRNPP 1596
Score = 26.6 bits (57), Expect(2) = 0.001
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -2
Query: 493 VDSSCPLRGAYNESILHLFFFC---H*AWRFGVGFLI 392
+D SCP NESI H F C AWR LI
Sbjct: 1462 IDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 1498
>ref|NP_187562.1| putative non-LTR reverse transcriptase; protein id: At3g09510.1
[Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
Length = 484
Score = 36.6 bits (83), Expect(2) = 0.001
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Frame = -1
Query: 356 VDHLLSFAGLFLLAQKDGILSVWLAVVWHVWVGRNEAVFREGVFLPECIFYLVKLKVWEW 177
+ ++L+F ++ +L VWL +W +W RN VF + P K + +W
Sbjct: 245 ISNILNFVQDTTMSDFHKLLPVWL--IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW 302
Query: 176 LKARSCH---------FTHATYEWFNEP 120
L A H EW N P
Sbjct: 303 LNATQSHKKTPSPTRQIAENKIEWRNPP 330
Score = 26.6 bits (57), Expect(2) = 0.001
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -2
Query: 493 VDSSCPLRGAYNESILHLFFFC---H*AWRFGVGFLI 392
+D SCP NESI H F C AWR LI
Sbjct: 196 IDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLI 232
>ref|NP_180710.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g31520.1 [Arabidopsis thaliana]
gi|25408166|pir||G84721 hypothetical protein At2g31520
[imported] - Arabidopsis thaliana
gi|4582447|gb|AAD24831.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1524
Score = 36.6 bits (83), Expect(2) = 0.011
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Frame = -1
Query: 356 VDHLLSFAGLFLLAQKDGILSVWLAVVWHVWVGRNEAVFREGVFLPECIFYLVKLKVWEW 177
+ ++L+F ++ +L VWL +W +W RN VF + P K + +W
Sbjct: 1285 ISNILNFVQDTTMSDFHKLLPVWL--IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDW 1342
Query: 176 LKARSCH---------FTHATYEWFNEP 120
L A H EW N P
Sbjct: 1343 LNATQSHKKTPSPTRQIAENKIEWRNPP 1370
Score = 23.1 bits (48), Expect(2) = 0.011
Identities = 10/22 (45%), Positives = 11/22 (49%)
Frame = -2
Query: 493 VDSSCPLRGAYNESILHLFFFC 428
+D CP NESI H F C
Sbjct: 1236 IDPICPRCHRENESINHALFTC 1257
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 31.6 bits (70), Expect(2) = 0.018
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -1
Query: 356 VDHLLSFAGLFLLAQKDGILSVWLAVVWHVWVGRNEAVFREGVFLPECIFYLVKLKVWEW 177
+ +LL G L+ ++ I W V+W +W R++ F +F P ++ V EW
Sbjct: 1131 IQYLLELKGKGLIPEQ--IKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEW 1188
Query: 176 LKARS 162
A++
Sbjct: 1189 FLAQA 1193
Score = 27.3 bits (59), Expect(2) = 0.018
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 517 LLRRNVPIVDSSCPLRGAYNESILHLFFFC 428
++RR +PI D C + G ESI H+ F C
Sbjct: 1075 IIRRGMPI-DPRCQVCGEEGESINHVLFTC 1103
>ref|NP_179156.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g15540.1 [Arabidopsis thaliana]
gi|25411644|pir||C84530 hypothetical protein At2g15540
[imported] - Arabidopsis thaliana
gi|4335720|gb|AAD17398.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1225
Score = 31.6 bits (70), Expect(2) = 0.039
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 353 DHLLSFAGLFLLAQKDGILSVWLAVVWHVWVGRNEAVFREGVFLPECI--FYLVKLKVWE 180
D LLS F +A+ I+ ++ ++W++W RN +F + P+ I F + + VW+
Sbjct: 1010 DFLLSRGKEFDIAED--IMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWK 1067
Score = 26.2 bits (56), Expect(2) = 0.039
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 481 CPLRGAYNESILHLFFFC 428
CP GA ESI HL F C
Sbjct: 964 CPRCGAEEESINHLLFLC 981
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,498,608
Number of Sequences: 1393205
Number of extensions: 11501345
Number of successful extensions: 29321
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29310
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
