Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001041A_C01 KMC001041A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P18948|VIT6_CAEEL VITELLOGENIN 6 PRECURSOR gi|2119746|pir||B4... 33 2.8
pir||F88750 protein vit-6 [imported] - Caenorhabditis elegans 33 2.8
ref|NP_501386.1| Yolk protein VITellogenin structural gene VIT-6... 33 2.8
prf||1714323B vitellogenin:ISOTYPE=6 33 2.8
ref|NP_734117.1| CI protein [Bean common mosaic virus] 32 6.2
>sp|P18948|VIT6_CAEEL VITELLOGENIN 6 PRECURSOR gi|2119746|pir||B43081 vitellogenin vit-6
precursor - Caenorhabditis elegans
gi|6926|emb|CAA39670.1| vitellogenin [Caenorhabditis
elegans]
Length = 1651
Score = 32.7 bits (73), Expect = 2.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 56 NHGKILKRHPGNHSVEQEQEQEQEEERNK*TTQNKW 163
N+ K+ K+H G +E E E ++EE R + T + +W
Sbjct: 1069 NYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEW 1104
>pir||F88750 protein vit-6 [imported] - Caenorhabditis elegans
Length = 1651
Score = 32.7 bits (73), Expect = 2.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 56 NHGKILKRHPGNHSVEQEQEQEQEEERNK*TTQNKW 163
N+ K+ K+H G +E E E ++EE R + T + +W
Sbjct: 1069 NYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEW 1104
>ref|NP_501386.1| Yolk protein VITellogenin structural gene VIT-6 (vit-6)
[Caenorhabditis elegans] gi|15055395|gb|AAC04423.2|
Vitellogenin structural genes (yolk protein genes)
protein 6 [Caenorhabditis elegans]
Length = 1650
Score = 32.7 bits (73), Expect = 2.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 56 NHGKILKRHPGNHSVEQEQEQEQEEERNK*TTQNKW 163
N+ K+ K+H G +E E E ++EE R + T + +W
Sbjct: 1069 NYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEW 1104
>prf||1714323B vitellogenin:ISOTYPE=6
Length = 1650
Score = 32.7 bits (73), Expect = 2.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 56 NHGKILKRHPGNHSVEQEQEQEQEEERNK*TTQNKW 163
N+ K+ K+H G +E E E ++EE R + T + +W
Sbjct: 1068 NYEKVYKKHNGRRYLEAEPEYDEEEHREQITKKFEW 1103
>ref|NP_734117.1| CI protein [Bean common mosaic virus]
Length = 634
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +1
Query: 424 FTNKHPLQLLIHEQISFGNIISY*AVTXNASV 519
FT +HP+QL + EQ+SF N + NA +
Sbjct: 213 FTTQHPVQLKVEEQLSFTNFVQAQGTGSNADM 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,422,246
Number of Sequences: 1393205
Number of extensions: 8848904
Number of successful extensions: 44438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40334
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
