Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001040A_C01 KMC001040A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43846|UGS4_SOLTU Soluble glycogen [starch] synthase, chlorop... 120 1e-26
pir||T07663 soluble starch synthase (EC 2.4.1.-) SSIII, precurso... 120 1e-26
emb|CAB40374.1| Starch synthase isoform SS III [Vigna unguiculata] 114 7e-25
ref|NP_172637.1| putative glycogen synthase; protein id: At1g117... 111 6e-24
gb|AAF88000.1| starch synthase III [Aegilops tauschii] 111 6e-24
>sp|Q43846|UGS4_SOLTU Soluble glycogen [starch] synthase, chloroplast precursor (SS III)
gi|1200154|emb|CAA65065.1| glycogen (starch) synthase
[Solanum tuberosum]
Length = 1230
Score = 120 bits (301), Expect = 1e-26
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = -2
Query: 587 FDGADAGGVDYALHRAISAWYDDRDWFNSLCKRVMEQDWSWYRPALDYLELYHAARKL 414
FDGADAGGVDYAL+RA+SAWYD RDWFNSLCK+VMEQDWSW RPALDYLELYHAARKL
Sbjct: 1172 FDGADAGGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARKL 1229
>pir||T07663 soluble starch synthase (EC 2.4.1.-) SSIII, precursor - potato
gi|1911166|emb|CAA64173.1| soluble-starch-synthase
[Solanum tuberosum]
Length = 1230
Score = 120 bits (301), Expect = 1e-26
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = -2
Query: 587 FDGADAGGVDYALHRAISAWYDDRDWFNSLCKRVMEQDWSWYRPALDYLELYHAARKL 414
FDGADAGGVDYAL+RA+SAWYD RDWFNSLCK+VMEQDWSW RPALDYLELYHAARKL
Sbjct: 1172 FDGADAGGVDYALNRALSAWYDGRDWFNSLCKQVMEQDWSWNRPALDYLELYHAARKL 1229
>emb|CAB40374.1| Starch synthase isoform SS III [Vigna unguiculata]
Length = 1147
Score = 114 bits (286), Expect = 7e-25
Identities = 51/58 (87%), Positives = 54/58 (92%)
Frame = -2
Query: 587 FDGADAGGVDYALHRAISAWYDDRDWFNSLCKRVMEQDWSWYRPALDYLELYHAARKL 414
FDGADAGGVDYAL+RAISAWYD R+WFN+LCK VMEQDWSW RPALDYLELYHAA KL
Sbjct: 1089 FDGADAGGVDYALNRAISAWYDGREWFNTLCKTVMEQDWSWNRPALDYLELYHAACKL 1146
>ref|NP_172637.1| putative glycogen synthase; protein id: At1g11720.1 [Arabidopsis
thaliana] gi|25402681|pir||H86250 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4835785|gb|AAD30251.1|AC007296_12 Strong similarity to
gb|X95759 soluble-starch-synthase precursor (SSIII) from
Solanum tuberosum. [Arabidopsis thaliana]
Length = 1025
Score = 111 bits (278), Expect = 6e-24
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -2
Query: 587 FDGADAGGVDYALHRAISAWYDDRDWFNSLCKRVMEQDWSWYRPALDYLELYHAARK 417
FDGADA GVDYAL+RAISAWYD R+WFNSLCK VMEQDWSW RPAL+YLELYH+ARK
Sbjct: 969 FDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSARK 1025
>gb|AAF88000.1| starch synthase III [Aegilops tauschii]
Length = 1611
Score = 111 bits (278), Expect = 6e-24
Identities = 48/57 (84%), Positives = 53/57 (92%)
Frame = -2
Query: 587 FDGADAGGVDYALHRAISAWYDDRDWFNSLCKRVMEQDWSWYRPALDYLELYHAARK 417
FDGAD+ GVDYAL+RAI AW+D RDWF+SLCKRVMEQDWSW RPALDY+ELYHAARK
Sbjct: 1554 FDGADSNGVDYALNRAIGAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYHAARK 1610
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,745,766
Number of Sequences: 1393205
Number of extensions: 8873840
Number of successful extensions: 16051
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 15568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16023
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
