Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001037A_C01 KMC001037A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194954.1| hypothetical protein; protein id: At4g32270.1 [... 75 4e-21
ref|NP_567879.1| putative protein; protein id: At4g31600.1, supp... 37 0.002
pir||T05110 hypothetical protein F28M20.210 - Arabidopsis thalia... 37 0.002
gb|EAA09384.1| agCP15152 [Anopheles gambiae str. PEST] 39 0.002
gb|AAK21346.1|AC024594_10 putative phosphate translocator [Oryza... 31 0.013
>ref|NP_194954.1| hypothetical protein; protein id: At4g32270.1 [Arabidopsis
thaliana] gi|7485359|pir||T05401 hypothetical protein
F10M6.90 - Arabidopsis thaliana
gi|2864616|emb|CAA16963.1| hypothetical protein
[Arabidopsis thaliana] gi|7270131|emb|CAB79945.1|
hypothetical protein [Arabidopsis thaliana]
Length = 364
Score = 74.7 bits (182), Expect(2) = 4e-21
Identities = 35/45 (77%), Positives = 39/45 (85%)
Frame = -3
Query: 658 LGQVILLFSCTLAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIG 524
L V+LL SC LAF LNY IFLNTTLNSA+TQTICGN+KDLFT+G
Sbjct: 110 LYMVVLLCSCVLAFVLNYCIFLNTTLNSALTQTICGNMKDLFTVG 154
Score = 48.9 bits (115), Expect(2) = 4e-21
Identities = 20/29 (68%), Positives = 23/29 (78%)
Frame = -1
Query: 528 LALGWIIFGGLPFDFWNVIGQLLGFAGSG 442
+ LGW++FGGLPFD NVIGQL GF G G
Sbjct: 153 VGLGWMLFGGLPFDLMNVIGQLFGFFGPG 181
>ref|NP_567879.1| putative protein; protein id: At4g31600.1, supported by cDNA:
gi_14596060, supported by cDNA: gi_17978696 [Arabidopsis
thaliana] gi|14596061|gb|AAK68758.1| putative protein
[Arabidopsis thaliana] gi|17978697|gb|AAL47342.1|
putative protein [Arabidopsis thaliana]
Length = 323
Score = 37.0 bits (84), Expect(2) = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3
Query: 649 VILLFSCTLAFFLNYSIFLNTTLNSAVTQTICGNLK 542
VIL+ S + LN+++FL T +NSA+T TI G LK
Sbjct: 229 VILILSLVMGIVLNFTMFLCTIVNSALTTTIVGVLK 264
Score = 26.6 bits (57), Expect(2) = 0.002
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 522 LGWIIFGGLPFDFWNVIGQLLGFAGSGLYAYYK 424
LG+++ GG+ NV G ++ AG Y+Y K
Sbjct: 271 LGFVLLGGVEVHALNVSGLVVNTAGGVWYSYAK 303
>pir||T05110 hypothetical protein F28M20.210 - Arabidopsis thaliana
gi|3281867|emb|CAA19763.1| putative protein [Arabidopsis
thaliana] gi|7270063|emb|CAB79878.1| putative protein
[Arabidopsis thaliana]
Length = 296
Score = 37.0 bits (84), Expect(2) = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -3
Query: 649 VILLFSCTLAFFLNYSIFLNTTLNSAVTQTICGNLK 542
VIL+ S + LN+++FL T +NSA+T TI G LK
Sbjct: 202 VILILSLVMGIVLNFTMFLCTIVNSALTTTIVGVLK 237
Score = 26.6 bits (57), Expect(2) = 0.002
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 522 LGWIIFGGLPFDFWNVIGQLLGFAGSGLYAYYK 424
LG+++ GG+ NV G ++ AG Y+Y K
Sbjct: 244 LGFVLLGGVEVHALNVSGLVVNTAGGVWYSYAK 276
>gb|EAA09384.1| agCP15152 [Anopheles gambiae str. PEST]
Length = 576
Score = 38.9 bits (89), Expect(2) = 0.002
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -3
Query: 649 VILLFSCTLAFFLNYSIFLNTTLNSAVTQTICGNLKDL 536
V L SC + F L+YS+ L T NSA+T TI G LK++
Sbjct: 277 VQFLLSCVMGFILSYSVILCTQHNSALTTTIVGCLKNI 314
Score = 24.3 bits (51), Expect(2) = 0.002
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = -1
Query: 522 LGWIIFGGLPFDFWNVIGQLLGFAGSGLYAY 430
+G I G F N +G + AGS LY Y
Sbjct: 319 IGMFIGGDYVFSLLNALGINISVAGSLLYTY 349
>gb|AAK21346.1|AC024594_10 putative phosphate translocator [Oryza sativa (japonica
cultivar-group)]
Length = 370
Score = 31.2 bits (69), Expect(2) = 0.013
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -3
Query: 667 FSFLGQVI--LLFSCTLAFFLNYSIFLNTTLNSAVTQTICGNLK 542
F++ QV+ ++ SC++A +N+S FL S VT + G+LK
Sbjct: 219 FTYTFQVVAFIVLSCSIAVCVNFSTFLVIGTTSPVTYQVLGHLK 262
Score = 29.3 bits (64), Expect(2) = 0.013
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -1
Query: 534 LPLALGWIIFGGLPFDFWNVIGQLLGFAGSGLYAYYKL 421
L L+ G+++ PF F NV G L+ G GLY+++ +
Sbjct: 265 LILSFGYVLLRD-PFTFRNVAGILVAIFGMGLYSFFSV 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,032,975
Number of Sequences: 1393205
Number of extensions: 12696564
Number of successful extensions: 30560
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 29570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30550
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
