Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001036A_C01 KMC001036A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84081.1|AF326781_2 putative chromosome condensation factor... 107 1e-22
pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidops... 104 9e-22
ref|NP_565144.1| expressed protein; protein id: At1g76950.1, sup... 104 9e-22
gb|AAL58903.1|AF462811_1 At1g76950/F22K20_5 [Arabidopsis thalian... 104 9e-22
ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42... 99 5e-20
>gb|AAK84081.1|AF326781_2 putative chromosome condensation factor [Triticum monococcum]
Length = 907
Score = 107 bits (267), Expect = 1e-22
Identities = 50/63 (79%), Positives = 56/63 (88%)
Frame = -3
Query: 658 EPGVYITLVXLRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSSSQA 479
EPGVYITL LRDGTRDLKRVRFSRR+FGE+QAE WW+ENREKVYEKYNVRS ++ SS A
Sbjct: 842 EPGVYITLTTLRDGTRDLKRVRFSRRRFGEHQAENWWNENREKVYEKYNVRSSERVSSAA 901
Query: 478 ALR 470
+ R
Sbjct: 902 STR 904
>pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidopsis thaliana
gi|2829910|gb|AAC00618.1| Unknown protein, contains
regulator of chromosome condensation motifs [Arabidopsis
thaliana]
Length = 1108
Score = 104 bits (260), Expect = 9e-22
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = -3
Query: 658 EPGVYITLVXLRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSSSQA 479
EPGVYITLV L DGTRDL+RVRFSRR+FGE+QAE WWSENREKVYEKYNVR +KS++
Sbjct: 1035 EPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVRVSEKSTASQ 1094
Query: 478 ALRE 467
R+
Sbjct: 1095 THRD 1098
>ref|NP_565144.1| expressed protein; protein id: At1g76950.1, supported by cDNA:
gi_15811366, supported by cDNA: gi_18087540 [Arabidopsis
thaliana] gi|15811367|gb|AAL08940.1| zinc finger protein
[Arabidopsis thaliana]
Length = 1103
Score = 104 bits (260), Expect = 9e-22
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = -3
Query: 658 EPGVYITLVXLRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSSSQA 479
EPGVYITLV L DGTRDL+RVRFSRR+FGE+QAE WWSENREKVYEKYNVR +KS++
Sbjct: 1030 EPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVRVSEKSTASQ 1089
Query: 478 ALRE 467
R+
Sbjct: 1090 THRD 1093
>gb|AAL58903.1|AF462811_1 At1g76950/F22K20_5 [Arabidopsis thaliana] gi|27363446|gb|AAO11642.1|
At1g76950/F22K20_5 [Arabidopsis thaliana]
Length = 1103
Score = 104 bits (260), Expect = 9e-22
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = -3
Query: 658 EPGVYITLVXLRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSSSQA 479
EPGVYITLV L DGTRDL+RVRFSRR+FGE+QAE WWSENREKVYEKYNVR +KS++
Sbjct: 1030 EPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVRVSEKSTASQ 1089
Query: 478 ALRE 467
R+
Sbjct: 1090 THRD 1093
>ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42140.1 [Arabidopsis
thaliana] gi|9757959|dbj|BAB08447.1| TMV resistance
protein-like [Arabidopsis thaliana]
Length = 1073
Score = 99.0 bits (245), Expect = 5e-20
Identities = 45/57 (78%), Positives = 50/57 (86%)
Frame = -3
Query: 658 EPGVYITLVXLRDGTRDLKRVRFSRRKFGENQAEIWWSENREKVYEKYNVRSGDKSS 488
EPGVYITL+ L DGTRDLKRVRFSRR+F E QAE WWSENRE+VYEKYN+R D+SS
Sbjct: 1006 EPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKYNIRGTDRSS 1062
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,137,313
Number of Sequences: 1393205
Number of extensions: 13433633
Number of successful extensions: 33477
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 32179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33415
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
