Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001034A_C01 KMC001034A_c01
(703 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175977.1| uracil phosphoribosyltransferase, putative; pro... 228 6e-59
sp|O65583|UPP_ARATH Uracil phosphoribosyltransferase (UMP pyroph... 228 6e-59
gb|AAM63338.1| putative uracil phosphoribosyl transferase [Arabi... 228 6e-59
gb|AAD28199.1|AF116860_1 uracil phosphoribosyltransferase 1 [Ara... 228 6e-59
ref|NP_567747.1| putative uracil phosphoribosyl transferase; pro... 228 6e-59
>ref|NP_175977.1| uracil phosphoribosyltransferase, putative; protein id:
At1g55810.1, supported by cDNA: gi_18176409 [Arabidopsis
thaliana] gi|18176410|gb|AAL60039.1| putative uracil
phosphoribosyltransferase [Arabidopsis thaliana]
gi|21689715|gb|AAM67479.1| putative uracil
phosphoribosyltransferase [Arabidopsis thaliana]
Length = 466
Score = 228 bits (581), Expect = 6e-59
Identities = 111/123 (90%), Positives = 118/123 (95%)
Frame = -3
Query: 701 ACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRK 522
ACCKGIKIGKILIHREGDNGQQLIYEKLP DIS+RHVLLLDPILGTGNSAVQAI LLI K
Sbjct: 344 ACCKGIKIGKILIHREGDNGQQLIYEKLPSDISERHVLLLDPILGTGNSAVQAIRLLISK 403
Query: 521 GVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGT 342
GVPESNIIFLNLISAP GV+VVCKKFP+IKIVTSEIE+GLN +FRV+PGMGEFGDRYFGT
Sbjct: 404 GVPESNIIFLNLISAPEGVNVVCKKFPRIKIVTSEIELGLNDEFRVVPGMGEFGDRYFGT 463
Query: 341 DDD 333
DD+
Sbjct: 464 DDE 466
>sp|O65583|UPP_ARATH Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase)
gi|7433942|pir||T05053 uracil phosphoribosyltransferase
(EC 2.4.2.9) - Arabidopsis thaliana
gi|2982455|emb|CAA18219.1| putative uracil
phosphoribosyl transferase [Arabidopsis thaliana]
gi|7269503|emb|CAB79506.1| putative uracil
phosphoribosyl transferase [Arabidopsis thaliana]
Length = 198
Score = 228 bits (581), Expect = 6e-59
Identities = 110/123 (89%), Positives = 118/123 (95%)
Frame = -3
Query: 701 ACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRK 522
ACCKGIKIGKILIHREGDNGQQL+YEKLP DIS+RHVLLLDPILGTGNSAV+AI+LLI K
Sbjct: 76 ACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLLDPILGTGNSAVEAINLLISK 135
Query: 521 GVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGT 342
GVPE NIIFLNLISAP GVHVVCKKFP+IKIVTSEI+ GLN++FRVIPGMGEFGDRYFGT
Sbjct: 136 GVPEGNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGT 195
Query: 341 DDD 333
DDD
Sbjct: 196 DDD 198
>gb|AAM63338.1| putative uracil phosphoribosyl transferase [Arabidopsis thaliana]
Length = 469
Score = 228 bits (581), Expect = 6e-59
Identities = 110/123 (89%), Positives = 118/123 (95%)
Frame = -3
Query: 701 ACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRK 522
ACCKGIKIGKILIHREGDNGQQL+YEKLP DIS+RHVLLLDPILGTGNSAV+AI+LLI K
Sbjct: 347 ACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLLDPILGTGNSAVEAINLLISK 406
Query: 521 GVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGT 342
GVPE NIIFLNLISAP GVHVVCKKFP+IKIVTSEI+ GLN++FRVIPGMGEFGDRYFGT
Sbjct: 407 GVPEGNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGT 466
Query: 341 DDD 333
DDD
Sbjct: 467 DDD 469
>gb|AAD28199.1|AF116860_1 uracil phosphoribosyltransferase 1 [Arabidopsis thaliana]
Length = 173
Score = 228 bits (581), Expect = 6e-59
Identities = 110/123 (89%), Positives = 118/123 (95%)
Frame = -3
Query: 701 ACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRK 522
ACCKGIKIGKILIHREGDNGQQL+YEKLP DIS+RHVLLLDPILGTGNSAV+AI+LLI K
Sbjct: 51 ACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLLDPILGTGNSAVEAINLLISK 110
Query: 521 GVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGT 342
GVPE NIIFLNLISAP GVHVVCKKFP+IKIVTSEI+ GLN++FRVIPGMGEFGDRYFGT
Sbjct: 111 GVPEGNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGT 170
Query: 341 DDD 333
DDD
Sbjct: 171 DDD 173
>ref|NP_567747.1| putative uracil phosphoribosyl transferase; protein id:
At4g26510.1, supported by cDNA: 21702. [Arabidopsis
thaliana]
Length = 402
Score = 228 bits (581), Expect = 6e-59
Identities = 110/123 (89%), Positives = 118/123 (95%)
Frame = -3
Query: 701 ACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRK 522
ACCKGIKIGKILIHREGDNGQQL+YEKLP DIS+RHVLLLDPILGTGNSAV+AI+LLI K
Sbjct: 280 ACCKGIKIGKILIHREGDNGQQLVYEKLPNDISERHVLLLDPILGTGNSAVEAINLLISK 339
Query: 521 GVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGT 342
GVPE NIIFLNLISAP GVHVVCKKFP+IKIVTSEI+ GLN++FRVIPGMGEFGDRYFGT
Sbjct: 340 GVPEGNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIDNGLNEEFRVIPGMGEFGDRYFGT 399
Query: 341 DDD 333
DDD
Sbjct: 400 DDD 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 650,380,450
Number of Sequences: 1393205
Number of extensions: 15224177
Number of successful extensions: 48196
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 46624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48030
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
