Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001032A_C01 KMC001032A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22755.1| unknown protein [Arabidopsis thaliana] gi|2839392... 55 8e-07
ref|NP_197532.1| CAF-like protein; protein id: At5g20320.1 [Arab... 53 2e-06
ref|NP_178180.1| hypothetical protein; protein id: At1g80650.1 [... 49 5e-05
ref|NP_191952.1| hypothetical protein; protein id: At4g00420.1 [... 44 0.001
ref|NP_614255.1| Uncharacterized protein specific for M.kandleri... 34 1.5
>gb|AAO22755.1| unknown protein [Arabidopsis thaliana] gi|28393927|gb|AAO42371.1|
unknown protein [Arabidopsis thaliana]
Length = 189
Score = 54.7 bits (130), Expect = 8e-07
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = -3
Query: 578 PDHQKIFTIKVTLEIEEIPDM-IFEFVGEPLLKKKDAAKSAAEGALWYLQQKGYLPNT 408
P H KIFT KVT+E++E + + E G P KKK AA+ AAE ALWYL+ GY T
Sbjct: 109 PCHMKIFTGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQT 166
>ref|NP_197532.1| CAF-like protein; protein id: At5g20320.1 [Arabidopsis thaliana]
Length = 1589
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/54 (46%), Positives = 33/54 (60%)
Frame = -3
Query: 578 PDHQKIFTIKVTLEIEEIPDMIFEFVGEPLLKKKDAAKSAAEGALWYLQQKGYL 417
P H K F KV LE+E+ P+M E GE KK AA+ AA+ A+W L+ G+L
Sbjct: 1535 PGHLKSFVYKVILEVEDAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1588
>ref|NP_178180.1| hypothetical protein; protein id: At1g80650.1 [Arabidopsis
thaliana] gi|25406682|pir||G96838 hypothetical protein
T21F11.2 [imported] - Arabidopsis thaliana
gi|6730736|gb|AAF27126.1|AC018849_14 hypothetical
protein; 4021-3030 [Arabidopsis thaliana]
gi|26449780|dbj|BAC42013.1| unknown protein [Arabidopsis
thaliana] gi|28950719|gb|AAO63283.1| At1g80650
[Arabidopsis thaliana]
Length = 198
Score = 48.9 bits (115), Expect = 5e-05
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -3
Query: 578 PDHQKIFTIKVTLEIEEIPDM-IFEFVGEPLLKKKDAAKSAAEGALWYLQ 432
P H ++FT KV +EI + + E G+P KKK AA+ AAEGALWYL+
Sbjct: 141 PCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEHAAEGALWYLE 190
>ref|NP_191952.1| hypothetical protein; protein id: At4g00420.1 [Arabidopsis
thaliana] gi|7459134|pir||T01529 hypothetical protein
A_IG005I10.3 - Arabidopsis thaliana
gi|2252826|gb|AAB62825.1| contains regions of weak
similarity to immunoglobulin heavy chain variable region
[Arabidopsis thaliana]
gi|6049868|gb|AAF02783.1|AF195115_3 contains regions of
weak similarity to immunoglobulin heavy chain variable
region [Arabidopsis thaliana] gi|7267129|emb|CAB80800.1|
hypothetical protein [Arabidopsis thaliana]
Length = 182
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 1/57 (1%)
Frame = -3
Query: 575 DHQKIFTIKVTLEIEEIPDM-IFEFVGEPLLKKKDAAKSAAEGALWYLQQKGYLPNT 408
++ F KVT+E++E + + E G P KKK AA+ AAE ALWYL+ GY T
Sbjct: 103 NYVSFFWGKVTVEMKEDSRITVLECFGNPQYKKKIAAEQAAEAALWYLKNVGYTLQT 159
>ref|NP_614255.1| Uncharacterized protein specific for M.kandleri, MK-8 family
[Methanopyrus kandleri AV19] gi|19887489|gb|AAM02185.1|
Uncharacterized protein specific for M.kandleri, MK-8
family [Methanopyrus kandleri AV19]
Length = 558
Score = 33.9 bits (76), Expect = 1.5
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 26 KEYPT*THNLIINNFNTCSLMYWVYLCPVTNFFLCISDVIHQ--TKNFHSYKRLMLYAT* 199
K+Y ++I NT Y VY+CPV +F + DV+ + N + K ++ A
Sbjct: 119 KDYDYIADIMVIKKLNTNG--YTVYVCPVIDFEELVGDVVDELGVYNLSNLKTMLRKAIE 176
Query: 200 TLHELYCTTD-FHLGSWVILN 259
TL D HL WV+++
Sbjct: 177 TLRNTGAIRDGSHLMMWVLIH 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,424,906
Number of Sequences: 1393205
Number of extensions: 9411514
Number of successful extensions: 18580
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18574
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
