Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001031A_C01 KMC001031A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA20388.1| Arabidopsis thaliana BRAHMA ortholog-related [Pla... 32 6.6
gb|AAM08764.2| similar to Plasmodium falciparum (isolate 3D7). H... 31 8.6
>gb|EAA20388.1| Arabidopsis thaliana BRAHMA ortholog-related [Plasmodium yoelii
yoelii]
Length = 1529
Score = 31.6 bits (70), Expect = 6.6
Identities = 27/103 (26%), Positives = 45/103 (43%)
Frame = +1
Query: 31 KRNCSTIPCNTSKAVQLFHTICGKYSTAQIII*LFLSNKDNMQQQFLKYLKSKEAT*ST* 210
++NC+ N K ++ +Y +I+I L + DN+ YL+ E
Sbjct: 1417 RQNCND---NKEKEKEIMGNKIHEYIDKKILI-LNKTRDDNISSLENNYLEENERKDELE 1472
Query: 211 NQTKPSSLSSLQNKRTMEKGIILKRGIFEEKYKTSTGFSLLLN 339
NQ KPS + +N KG + FE+ Y +G S +L+
Sbjct: 1473 NQDKPSDVEKEENIIKKRKGEEIYINNFEQNYSQLSGPSDMLD 1515
>gb|AAM08764.2| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 898
Score = 31.2 bits (69), Expect = 8.6
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Frame = +3
Query: 171 EVLEIKGS-YLKYLKSNEAIFA*FSSE*TYNG--KRHNPETGHF*RKIQNLDRIFSPI-- 335
E+LE+ Y K+ KS E I + + YN + + + + NL ++ P
Sbjct: 511 ELLEMTNEHYSKFQKSLEEIMSKSNGTTRYNDLVQLEKQRSNEYVKICNNLKKLIQPSAF 570
Query: 336 -------EHHNSSKRGLFTTPEALSKIMNENYF**KNI*YPSATWQPFHYNFSSLIGSQK 494
HH+ K T + LSKI++EN W N I +
Sbjct: 571 RQHHHHHHHHHHHKPSQKITSDLLSKILDENIL----------KWNTLISNLQLEISLKL 620
Query: 495 NHQKNMY 515
N+Q N+Y
Sbjct: 621 NNQNNVY 627
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,424,954
Number of Sequences: 1393205
Number of extensions: 9140433
Number of successful extensions: 17673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17670
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
