Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001030A_C01 KMC001030A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175929.1| acetyl-CoA synthetase, putative; protein id: At... 74 7e-13
ref|NP_197696.1| acetyl-CoA synthetase-like protein; protein id:... 64 9e-10
ref|ZP_00118729.1| hypothetical protein [Cytophaga hutchinsonii] 49 4e-05
gb|AAO52478.1| similar to Bradyrhizobium japonicum. Acetyl-coenz... 42 0.005
ref|NP_378009.1| 661aa long hypothetical acetyl-CoA synthetase [... 41 0.006
>ref|NP_175929.1| acetyl-CoA synthetase, putative; protein id: At1g55320.1
[Arabidopsis thaliana] gi|25405817|pir||D96595 probable
acetyl-CoA synthetase, 45051-31547 [imported] -
Arabidopsis thaliana
gi|12323178|gb|AAG51574.1|AC027034_20 acetyl-CoA
synthetase, putative; 45051-31547 [Arabidopsis thaliana]
Length = 2655
Score = 74.3 bits (181), Expect = 7e-13
Identities = 37/57 (64%), Positives = 46/57 (79%), Gaps = 1/57 (1%)
Frame = -3
Query: 492 LIILVVLKKGYNSNA-ETLKKKFSKAIQTNLNPLFKVSLVRVVPEFPRTASNKLLRR 325
L+I VLK+G+ + E LK KFS+ IQ +LNPLFKVS V++VPEFPRTAS+KLLRR
Sbjct: 652 LVIFAVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRR 708
>ref|NP_197696.1| acetyl-CoA synthetase-like protein; protein id: At5g23050.1
[Arabidopsis thaliana] gi|9759363|dbj|BAB09822.1|
acetyl-CoA synthetase-like protein [Arabidopsis
thaliana]
Length = 668
Score = 63.9 bits (154), Expect = 9e-10
Identities = 35/64 (54%), Positives = 43/64 (66%), Gaps = 2/64 (3%)
Frame = -3
Query: 492 LIILVVLKKGYNSNAET--LKKKFSKAIQTNLNPLFKVSLVRVVPEFPRTASNKLLRRVL 319
L+I VV K SN + LKK F+ IQ LNPLFKVS V +P PRTA+NK++RRVL
Sbjct: 596 LVIAVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVL 655
Query: 318 RDQM 307
R Q+
Sbjct: 656 RQQL 659
>ref|ZP_00118729.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 653
Score = 48.5 bits (114), Expect = 4e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = -3
Query: 486 ILVVLKKGYNSNAETLKKKFSKAIQTNLNPLFKVSLVRVVPEFPRTASNKLLRRVLRDQM 307
++V + + ++ L+K+ K IQ LNPLFK+ + FPRTASNKL+R+ LR ++
Sbjct: 590 LVVFVHTTHETDNVQLQKELQKIIQAELNPLFKIYDLVFKENFPRTASNKLMRKELRKEL 649
>gb|AAO52478.1| similar to Bradyrhizobium japonicum. Acetyl-coenzyme A synthetase
[Dictyostelium discoideum]
Length = 655
Score = 41.6 bits (96), Expect = 0.005
Identities = 21/56 (37%), Positives = 31/56 (54%)
Frame = -3
Query: 483 LVVLKKGYNSNAETLKKKFSKAIQTNLNPLFKVSLVRVVPEFPRTASNKLLRRVLR 316
LVVLK Y AE ++ + K ++ N+ P+ V V P+T S K+LR +LR
Sbjct: 595 LVVLKPQYKDCAEEVENELIKEVRENIGPVATFKKVLSVNRLPKTGSGKILRNILR 650
>ref|NP_378009.1| 661aa long hypothetical acetyl-CoA synthetase [Sulfolobus tokodaii]
gi|15623129|dbj|BAB67118.1| 661aa long hypothetical
acetyl-CoA synthetase [Sulfolobus tokodaii]
Length = 661
Score = 41.2 bits (95), Expect = 0.006
Identities = 20/58 (34%), Positives = 36/58 (61%)
Frame = -3
Query: 489 IILVVLKKGYNSNAETLKKKFSKAIQTNLNPLFKVSLVRVVPEFPRTASNKLLRRVLR 316
+ VVLK G +N E LKK ++ ++ + P+ +S + V + P+T S K++RRV++
Sbjct: 570 VAFVVLKVGQKANEE-LKKSLNEWVREQVGPIASLSSIYFVSKLPKTRSGKIMRRVVK 626
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,478,477
Number of Sequences: 1393205
Number of extensions: 6361342
Number of successful extensions: 14738
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 14513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14734
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
