Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001029A_C01 KMC001029A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91894.1| hypothetical protein [Oryza sativa (japonica cult... 152 2e-36
ref|NP_566405.1| hypothetical protein; protein id: At3g11920.1 [... 142 2e-33
ref|NP_502602.1| Putative cytoplasmic protein of ancient origin ... 70 1e-11
gb|AAL92600.1|AC115678_1 similar to Dictyostelium discoideum (Sl... 49 5e-05
ref|NP_192595.1| hypothetical protein; protein id: At4g08550.1 [... 47 2e-04
>gb|AAM91894.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 704
Score = 152 bits (385), Expect = 2e-36
Identities = 71/111 (63%), Positives = 86/111 (76%)
Frame = -2
Query: 520 KLNPLFHFGLCNGTKSSPNVRFFSSDRVVDELRGAAREFFEKDGFEVDLEKRTVYLTRIF 341
K+NPL HFGLC+ T+SSP VRFFS+ V ELR AAR+FF G E+DLE RTV+LT I
Sbjct: 593 KVNPLVHFGLCDATRSSPIVRFFSTQGVEPELRHAARKFFLNGGVEIDLESRTVHLTSII 652
Query: 340 NLFSGDFGTEKDILKWIINYSDPNKAGLLTHLLGDGGPVNISYQNFDWSIN 188
+S DFG +++ LKWI+NY DP KAGLLTHLL DGG +NISY N+DWS+N
Sbjct: 653 KWYSVDFGQDRETLKWILNYLDPTKAGLLTHLLNDGGAINISYLNYDWSLN 703
>ref|NP_566405.1| hypothetical protein; protein id: At3g11920.1 [Arabidopsis
thaliana] gi|6671948|gb|AAF23208.1|AC016795_21
hypothetical protein [Arabidopsis thaliana]
gi|10998130|dbj|BAB03101.1| gene_id:MEC18.2~unknown
protein [Arabidopsis thaliana]
Length = 630
Score = 142 bits (358), Expect = 2e-33
Identities = 70/113 (61%), Positives = 84/113 (73%), Gaps = 1/113 (0%)
Frame = -2
Query: 520 KLNPLFHFGLCNGTKSSPNVRFFSSDRVVDELRGAAREFFEKDGFEVDLEKRTVYLTRIF 341
KLNPL HFGLC+GTKSSP VRFF+ V EL+ AAREFF+ G EV L+KRT++L+RI
Sbjct: 518 KLNPLVHFGLCDGTKSSPVVRFFTPQGVEAELKRAAREFFQNGGIEVVLDKRTIHLSRII 577
Query: 340 NLFSGDFGTEKDILKWIINYSDPNKAGLLTHLLGD-GGPVNISYQNFDWSINS 185
+ DF EK +LKWI+ Y D N AGLLTHLLGD GG NI YQ++DWS N+
Sbjct: 578 KWYKEDFSEEKKMLKWIMGYIDSNDAGLLTHLLGDGGGSFNIVYQDYDWSTNN 630
>ref|NP_502602.1| Putative cytoplasmic protein of ancient origin [Caenorhabditis
elegans] gi|7509861|pir||T26907 hypothetical protein
Y45F10A.8 - Caenorhabditis elegans
gi|3880985|emb|CAA16364.1| Hypothetical protein
Y45F10A.8 [Caenorhabditis elegans]
Length = 307
Score = 70.1 bits (170), Expect = 1e-11
Identities = 44/115 (38%), Positives = 68/115 (58%), Gaps = 6/115 (5%)
Frame = -2
Query: 514 NPLFHFGLCNGTKSSPNVRFFSSDRVVDELRGAARE-FFEKDGF-EVDLEKRTVYLTRIF 341
+PL +F LC+G+K++P +R + S + E+R AR+ D F VD++K ++L + F
Sbjct: 166 DPLIYFSLCSGSKTTPPLRVYHSKSIHQEMRENARQTLLRGDKFLRVDMKKNVIHLGKTF 225
Query: 340 NLFSGDFG--TEKDILKWIINYSDPNKAGLLTHL--LGDGGPVNISYQNFDWSIN 188
FS DFG TEK IL+WI++ D N++ +L L G +I Y +DWS N
Sbjct: 226 KWFSDDFGGSTEK-ILQWILDVLDTNESDKKHNLQKLFFTGEYSIEYIPYDWSTN 279
>gb|AAL92600.1|AC115678_1 similar to Dictyostelium discoideum (Slime mold). Nucleotide exchange
factor RasGEF P
Length = 1728
Score = 48.5 bits (114), Expect = 5e-05
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = -2
Query: 517 LNPLFHFGLCNGTKSSPNVRFFSSDRVVDELRGAAREFFEKDGFEVDLEKRTVYLTRIFN 338
L+P HF L + P +R FS + VV++L EF ++ ++K+ + L ++F+
Sbjct: 1161 LDPRIHFALFAVNITIPCMRIFSPETVVEDLHKCGEEFCSSK-IDICIKKKEISLPKVFS 1219
Query: 337 LFSGDFG-TEKDILKWIINYSDPNKAGLLTHLL 242
+ DFG + ++LKW+ + K L LL
Sbjct: 1220 HYGTDFGKSRSEMLKWVFQFLTATKRTELLELL 1252
>ref|NP_192595.1| hypothetical protein; protein id: At4g08550.1 [Arabidopsis
thaliana] gi|7487029|pir||T01829 hypothetical protein
T15F16.10 - Arabidopsis thaliana
gi|3377810|gb|AAC28183.1| contains similarity to
glutaredoxins [Arabidopsis thaliana]
gi|7267497|emb|CAB77980.1| hypothetical protein
[Arabidopsis thaliana]
Length = 587
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = -2
Query: 511 PLFHFGLCNGTKSSPNVRFFSSDRVVDELRGAAREFFEKDGFEVDLEKRTVYLTRIFN 338
PL HF L GT+S P +R F+ + EL AAR+F G VDL + +++IF+
Sbjct: 529 PLTHFTLVCGTRSGPPLRCFTPGEIDKELMEAARDFLRCGGLRVDLNAKVAEISKIFD 586
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,131,163
Number of Sequences: 1393205
Number of extensions: 8915749
Number of successful extensions: 20803
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 20225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20794
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
