Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001027A_C01 KMC001027A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50647 serine/arginine-rich protein [imported] - Arabidopsi... 62 8e-09
dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 prote... 58 1e-07
ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 (22.6 kD) (r... 55 5e-07
pir||T09704 probable arginine/serine-rich splicing factor - alfa... 55 7e-07
ref|NP_502696.1| SAP domain containing protein [Caenorhabditis e... 54 1e-06
>pir||T50647 serine/arginine-rich protein [imported] - Arabidopsis thaliana
gi|6572475|gb|AAF17288.1|AF099940_1 Serine/arginine-rich
protein [Arabidopsis thaliana]
gi|9843659|emb|CAC03603.1| SC35-like splicing factor
SCL33, 33 kD [Arabidopsis thaliana]
Length = 287
Score = 61.6 bits (148), Expect = 8e-09
Identities = 47/103 (45%), Positives = 54/103 (51%), Gaps = 16/103 (15%)
Frame = -3
Query: 581 DYYSPERSRSYSSSRSP-----SGGKDYRRSP-HPRENGRSPNDKRDQSPSRSLSPRRDD 420
DYYSP R + S SP G + Y RSP GRS R +S S S SPRR
Sbjct: 162 DYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSI 221
Query: 419 PSNEKRDRAP----NRSVSPRRD-DRSPSRSRS-----RSYSP 321
+ +R R+P NRSVSPRR RSP RSRS RSY+P
Sbjct: 222 SRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTP 264
Score = 52.4 bits (124), Expect = 5e-06
Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = -3
Query: 572 SPERSRSYSSSRSPSGGKDYRRSPHPREN-GRSPNDKRDQSP--SRSLSPRRDDPSNEKR 402
SP S S +P GK SP PR + RSP R SP +RS+SPRR + +R
Sbjct: 192 SPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRR 251
Query: 401 DRAPNRSVSPRRDDRSPSRSRSRSYSP 321
R+P RS R +P +RSRS SP
Sbjct: 252 SRSPRRS----RRSYTPEPARSRSQSP 274
>dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 protein) [Oryza sativa
(japonica cultivar-group)]
Length = 380
Score = 57.8 bits (138), Expect = 1e-07
Identities = 38/90 (42%), Positives = 47/90 (52%)
Frame = -3
Query: 590 VRDDYYSPERSRSYSSSRSPSGGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSN 411
+R Y +RSRSYS SRS S G+ Y RS PR G+SP K SR + R S
Sbjct: 245 IRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPRSGGKSPKGK----SSRRSASRSRSRSA 300
Query: 410 EKRDRAPNRSVSPRRDDRSPSRSRSRSYSP 321
R R+ ++ RSPSRS +RS SP
Sbjct: 301 SSRSRSESKG-------RSPSRSPARSQSP 323
Score = 39.7 bits (91), Expect = 0.031
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = -3
Query: 572 SPERSRSYSSSRSP-SGGKDYRRSPHPRENGRSPNDKRDQSP---SRSLSPRRDDPSNEK 405
S R RSYS SRSP SGGK SP + + RS + R +S SRS S R +
Sbjct: 263 SRSRGRSYSRSRSPRSGGK----SPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPA 318
Query: 404 RDRAPNRSVSPRRDDRSPSRSRSRSYSPR 318
R ++PN S+ P ++P + PR
Sbjct: 319 RSQSPNTSL-PMVMQQAPRNAAQAGAPPR 346
>ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 (22.6 kD) (rsp-4)
[Caenorhabditis elegans] gi|3929375|sp|Q09511|SFR2_CAEEL
Putative splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) gi|7439997|pir||T15917 hypothetical protein EEED8.7
- Caenorhabditis elegans gi|733604|gb|AAC46767.1| Sr
protein (splicing factor) protein 4, isoform a
[Caenorhabditis elegans]
Length = 196
Score = 55.5 bits (132), Expect = 5e-07
Identities = 37/78 (47%), Positives = 44/78 (55%)
Frame = -3
Query: 563 RSRSYSSSRSPSGGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSNEKRDRAPNR 384
RS YS SRSP + RSP R+ SP D+RD S SRS SP + + K R+ +R
Sbjct: 124 RSPRYSRSRSPRRSRSRTRSPPSRDRRDSP-DRRDNSRSRSRSPPPREDGSPKERRSRSR 182
Query: 383 SVSPRRDDRSPSRSRSRS 330
S S RSPSRSRS S
Sbjct: 183 SAS-----RSPSRSRSNS 195
Score = 53.9 bits (128), Expect = 2e-06
Identities = 33/75 (44%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Frame = -3
Query: 527 GGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSNEKRDRAPNRSVS-------PR 369
GG RRS PR RSP R +SP RS S R PS ++RD R S P
Sbjct: 109 GGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPP 168
Query: 368 RDDRSPSRSRSRSYS 324
R+D SP RSRS S
Sbjct: 169 REDGSPKERRSRSRS 183
>pir||T09704 probable arginine/serine-rich splicing factor - alfalfa
gi|3334756|emb|CAA76346.1| putative arginine/serine-rich
splicing factor [Medicago sativa]
Length = 286
Score = 55.1 bits (131), Expect = 7e-07
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = -3
Query: 584 DDYYSPERSRSYSSSRSPSGGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSNEK 405
D+ S RSRS S +RSP PR RSP+ KR SP RS SP+R + K
Sbjct: 182 DERRSRSRSRSVDSRSPVRRSSIPKRSPSPR---RSPSPKRSPSPKRSPSPKRS--PSLK 236
Query: 404 RDRAPNRSVSPRRD---DRSPSRSR-SRSYSPR 318
R +P +SVSPR+ + SRSR RS++PR
Sbjct: 237 RSISPQKSVSPRKSPLRESPDSRSRGGRSFTPR 269
Score = 45.1 bits (105), Expect = 7e-04
Identities = 40/104 (38%), Positives = 45/104 (42%), Gaps = 13/104 (12%)
Frame = -3
Query: 593 RVRDDYYSPE-----RSRSYSS---SRSPSGGKDYRR-----SPHPRENGRSPNDKRDQS 453
R RDDY + RSRSY R +D+RR S P GR D+
Sbjct: 125 RHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASPGYKGRGRGRHDDER 184
Query: 452 PSRSLSPRRDDPSNEKRDRAPNRSVSPRRDDRSPSRSRSRSYSP 321
SRS S D S +R P RS SPRR SP RS S SP
Sbjct: 185 RSRSRSRSVDSRSPVRRSSIPKRSPSPRRSP-SPKRSPSPKRSP 227
Score = 41.6 bits (96), Expect = 0.008
Identities = 41/101 (40%), Positives = 49/101 (47%), Gaps = 14/101 (13%)
Frame = -3
Query: 563 RSRSYSSSRSPSGGKDYRRSPHPRE----------NGRSPNDKRDQSPSRSLSPRRDDPS 414
R RS S S SP G K R H E + RSP +R P RS SPRR
Sbjct: 160 RRRSRSRSASP-GYKGRGRGRHDDERRSRSRSRSVDSRSPV-RRSSIPKRSPSPRRSP-- 215
Query: 413 NEKRDRAPNRSVSPRRDDRSPSRSRS----RSYSPR*SAIK 303
+ KR +P RS SP+ RSPS RS +S SPR S ++
Sbjct: 216 SPKRSPSPKRSPSPK---RSPSLKRSISPQKSVSPRKSPLR 253
Score = 37.4 bits (85), Expect = 0.15
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Frame = -3
Query: 563 RSRSYSSSRSPSGG--------KDYRRSPHPRENGRSPNDK---RDQSPSRSLSPRRDDP 417
RS+S S SRSPS KDYRR R R D+ RD+ R R P
Sbjct: 112 RSKS-SRSRSPSKRRHRDDYKEKDYRRRSRSRSYDRHERDRHRGRDRDHRRRSRSRSASP 170
Query: 416 SNEKRDRAPNRSVSPRRDDRSPSRSRSRSYSPR 318
+ R R R DD SRSRSRS R
Sbjct: 171 GYKGRGRG-------RHDDERRSRSRSRSVDSR 196
>ref|NP_502696.1| SAP domain containing protein [Caenorhabditis elegans]
gi|7509538|pir||T22490 hypothetical protein Y37A1B.1 -
Caenorhabditis elegans gi|3877428|emb|CAB05201.1|
Hypothetical protein Y37A1B.1 [Caenorhabditis elegans]
gi|3880782|emb|CAA19496.1| Hypothetical protein Y37A1B.1
[Caenorhabditis elegans]
Length = 1222
Score = 54.3 bits (129), Expect = 1e-06
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = -3
Query: 572 SPERSRSYSSSRSPSGGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSNEKRDRA 393
SP R R+ S R ++ R S PRE RSP +R SP ++ SP ++ KR+R+
Sbjct: 235 SPPR-RTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERS 293
Query: 392 PNRSVSP--RRDDRSPSRSRSR 333
P+ SV+P RR+ SP R R+R
Sbjct: 294 PSGSVAPSVRRESASPPRRRAR 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,487,540
Number of Sequences: 1393205
Number of extensions: 9824861
Number of successful extensions: 47783
Number of sequences better than 10.0: 1367
Number of HSP's better than 10.0 without gapping: 32842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42021
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
