Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001026A_C01 KMC001026A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180225.1| unknown protein; protein id: At2g26570.1 [Arabi... 43 0.003
gb|ZP_00055230.1| hypothetical protein [Magnetospirillum magneto... 38 0.13
ref|NP_199102.1| putative protein; protein id: At5g42880.1 [Arab... 35 0.64
ref|NP_195065.1| putative protein; protein id: At4g33390.1 [Arab... 35 1.1
gb|AAN39295.1| MAP kinase kinase kinase [Cryptococcus neoformans... 34 1.9
>ref|NP_180225.1| unknown protein; protein id: At2g26570.1 [Arabidopsis thaliana]
gi|7487885|pir||T00990 hypothetical protein At2g26570
[imported] - Arabidopsis thaliana
gi|2739382|gb|AAC14505.1| unknown protein [Arabidopsis
thaliana]
Length = 807
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -2
Query: 601 YMSSP-KAY-VHANNETGSFRDTKTGKKKKKSFFPRILMFFARKKSH 467
Y SSP ++Y N+ET TK+ KKKKK FPR MF ++KKSH
Sbjct: 759 YASSPSESYGTEENSETNLSPQTKSRKKKKKLSFPRFFMFLSKKKSH 805
>gb|ZP_00055230.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 472
Score = 37.7 bits (86), Expect = 0.13
Identities = 26/100 (26%), Positives = 49/100 (49%)
Frame = +1
Query: 307 FRWSTIQSTIHTAIRNMYKYGIISNNRRKDEMFRKLQHHTMLIVSKGITLNGLDVIFFLQ 486
F +S QS +T RN+ + +S RR D + HH ++ ++ I NG D++F+
Sbjct: 141 FGFSLEQSERNTVRRNVVEGKKVSLGRRGDGIKLWYSHHNLIEANQFI--NGRDIVFWYS 198
Query: 487 RTSKFAGKRTSSSSFQFLYLGMIQFHCLHGHKPLDSTCNV 606
++F G R S + L+L Q++ + D++ +
Sbjct: 199 THNRFVGNRQSGGRYG-LHLMQAQYNIAENNYFFDNSTGI 237
>ref|NP_199102.1| putative protein; protein id: At5g42880.1 [Arabidopsis thaliana]
gi|9758576|dbj|BAB09189.1|
gene_id:MBD2.7~pir||T00990~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 751
Score = 35.4 bits (80), Expect = 0.64
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 8/43 (18%)
Frame = -2
Query: 571 ANNETGSFRDTKTG--------KKKKKSFFPRILMFFARKKSH 467
++N TG T KKKK S FP++ MF +RKKSH
Sbjct: 706 SSNNTGGSTTTNNNNLTPETKKKKKKLSLFPKVFMFLSRKKSH 748
>ref|NP_195065.1| putative protein; protein id: At4g33390.1 [Arabidopsis thaliana]
gi|7485652|pir||T05990 hypothetical protein F17M5.150 -
Arabidopsis thaliana gi|4490306|emb|CAB38797.1| putative
protein [Arabidopsis thaliana]
gi|7270287|emb|CAB80056.1| putative protein [Arabidopsis
thaliana]
Length = 779
Score = 34.7 bits (78), Expect = 1.1
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = -2
Query: 628 AHNALISGHYMSSPKAYVHANNETGSFRDTKTGKKKKKSFFPRILMFFARKKSH 467
+H I G + V ET KKKKK FPR MF +KKSH
Sbjct: 726 SHGKSIQGSKEKEAETSVSNETETNPIPQVNPVKKKKK-LFPRFFMFLMKKKSH 778
>gb|AAN39295.1| MAP kinase kinase kinase [Cryptococcus neoformans var. neoformans]
Length = 1184
Score = 33.9 bits (76), Expect = 1.9
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +2
Query: 98 NHANILQISNPGGGKIDLIKSYTDFTEAEVQHILR-LYTKQN--HSFSFLTKD--GELIC 262
NH NI PGG L+ SY F EA V + +R + T N H + +D G I
Sbjct: 986 NHLNIFLEYVPGGSVAALLNSYGAFEEALVGNFVRQILTGLNYLHERDIVHRDIKGANIL 1045
Query: 263 IYSQGAEK-------ETIHNPHLDGVQSNQPYIQQS 349
+ ++G K + + N L+G+ N+P +Q S
Sbjct: 1046 VDNKGGIKISDFGISKKVENSLLNGLHPNRPSLQGS 1081
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,432,775
Number of Sequences: 1393205
Number of extensions: 12287488
Number of successful extensions: 27202
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 26379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27199
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
