Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001025A_C01 KMC001025A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF35250.1|AF227632_1 mismatch binding protein Mus3 [Zea mays] 59 5e-08
ref|NP_192116.1| G/T DNA mismatch repair enzyme; protein id: At4... 52 4e-06
gb|AAB57798.1| AGAA.3 [Arabidopsis thaliana] 52 4e-06
ref|XP_226692.1| similar to DNA MISMATCH REPAIR PROTEIN MSH3 (DI... 40 0.018
pir||JC4019 DNA mismatch repair protein rep-3 - mouse 40 0.023
>gb|AAF35250.1|AF227632_1 mismatch binding protein Mus3 [Zea mays]
Length = 629
Score = 58.9 bits (141), Expect = 5e-08
Identities = 31/58 (53%), Positives = 42/58 (71%)
Frame = -3
Query: 597 YGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRKASSEAYSSNQNWVDEIIAIIQNL 424
YGVNVARLAG+PT LLQ+A KS EFEA YGK K +++ + S Q+ D+ + I++L
Sbjct: 545 YGVNVARLAGIPTKLLQRANEKSSEFEANYGKRHKMTNDKHVSAQS--DDKFSAIRDL 600
>ref|NP_192116.1| G/T DNA mismatch repair enzyme; protein id: At4g02070.1 [Arabidopsis
thaliana] gi|6226648|sp|O04716|MSH6_ARATH DNA mismatch
repair protein MSH6-1 (AtMsh6-1) gi|7487955|pir||T01508
mismatch repair enzyme T10M13.8 - Arabidopsis thaliana
gi|3912921|gb|AAC78699.1| G/T DNA mismatch repair enzyme
[Arabidopsis thaliana] gi|5763966|emb|CAB53337.1|
mismatch repair protein msh6-1 [Arabidopsis thaliana]
gi|7268591|emb|CAB80700.1| G/T DNA mismatch repair enzyme
[Arabidopsis thaliana]
Length = 1324
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/73 (39%), Positives = 47/73 (63%)
Frame = -3
Query: 597 YGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRKASSEAYSSNQNWVDEIIAIIQNLNK 418
YGVNVARLAGLP +LQ+A KS+EFEA YGK + + ++ + +II+ + + +
Sbjct: 1245 YGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKLAA---MIKQIISSVASDSD 1301
Query: 417 AATNLNCQDSICD 379
+ + +DS+C+
Sbjct: 1302 YSAS---KDSLCE 1311
>gb|AAB57798.1| AGAA.3 [Arabidopsis thaliana]
Length = 1362
Score = 52.4 bits (124), Expect = 4e-06
Identities = 29/73 (39%), Positives = 47/73 (63%)
Frame = -3
Query: 597 YGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRKASSEAYSSNQNWVDEIIAIIQNLNK 418
YGVNVARLAGLP +LQ+A KS+EFEA YGK + + ++ + +II+ + + +
Sbjct: 1283 YGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKLAA---MIKQIISSVASDSD 1339
Query: 417 AATNLNCQDSICD 379
+ + +DS+C+
Sbjct: 1340 YSAS---KDSLCE 1349
>ref|XP_226692.1| similar to DNA MISMATCH REPAIR PROTEIN MSH3 (DIVERGENT UPSTREAM
PROTEIN) (DUP) (MISMATCH REPAIR PROTEIN 1) (MRP1)
[Rattus norvegicus]
Length = 440
Score = 40.4 bits (93), Expect = 0.018
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -3
Query: 597 YGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRK 493
YG+NVA+LA +P +LQKAA KSKE E RK
Sbjct: 361 YGLNVAKLADVPREILQKAAHKSKELEGLVNLRRK 395
>pir||JC4019 DNA mismatch repair protein rep-3 - mouse
Length = 1126
Score = 40.0 bits (92), Expect = 0.023
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -3
Query: 597 YGVNVARLAGLPTSLLQKAAAKSKEFEATYGKCRK 493
YG+NVA+LA +P +LQKAA KSKE E RK
Sbjct: 1057 YGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRK 1091
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,099,796
Number of Sequences: 1393205
Number of extensions: 9234132
Number of successful extensions: 22792
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 22256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22789
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
