Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001024A_C01 KMC001024A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_715524.1| ABC-type multidrug transport system, ATPase and... 37 0.17
dbj|BAB16425.1| glycine rich protein [Nicotiana tabacum] 36 0.29
emb|CAB67122.1| cell wall protein [Nicotiana tabacum] 36 0.29
gb|AAK57546.1| glycine rich protein [Nicotiana tabacum] 36 0.29
sp|P23137|GRP_TOBAC Glycine-rich protein precursor gi|7489139|pi... 36 0.29
>ref|NP_715524.1| ABC-type multidrug transport system, ATPase and permease components
[Wigglesworthia brevipalpis] gi|25166175|dbj|BAC24366.1|
mdl [Wigglesworthia brevipalpis]
Length = 582
Score = 37.0 bits (84), Expect = 0.17
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 278 YCSTFYSLERPTHSNHNNIHNLNTLGHSRH*DRRRVHKICFHPSVHSLLEKNMHSTTI 451
Y + F L TH N NNI + + G ++ + CF SV EKNMHS I
Sbjct: 189 YQNEFSKLNNKTHENLNNIKTIKSFGSEKY------YLSCFSSSVFYANEKNMHSEKI 240
>dbj|BAB16425.1| glycine rich protein [Nicotiana tabacum]
Length = 109
Score = 36.2 bits (82), Expect = 0.29
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = -1
Query: 332 CCYGCCALGARGCRRCCS 279
C YGCC G GC+RCCS
Sbjct: 76 CRYGCCRKGYNGCKRCCS 93
>emb|CAB67122.1| cell wall protein [Nicotiana tabacum]
Length = 106
Score = 36.2 bits (82), Expect = 0.29
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = -1
Query: 332 CCYGCCALGARGCRRCCS 279
C YGCC G GC+RCCS
Sbjct: 73 CRYGCCRKGYNGCKRCCS 90
>gb|AAK57546.1| glycine rich protein [Nicotiana tabacum]
Length = 109
Score = 36.2 bits (82), Expect = 0.29
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = -1
Query: 332 CCYGCCALGARGCRRCCS 279
C YGCC G GC+RCCS
Sbjct: 76 CRYGCCRKGYNGCKRCCS 93
>sp|P23137|GRP_TOBAC Glycine-rich protein precursor gi|7489139|pir||T03257 glycine-rich
protein precursor - common tobacco
gi|170267|gb|AAB02879.1| glycine-rich protein precursor
[Nicotiana tabacum]
Length = 109
Score = 36.2 bits (82), Expect = 0.29
Identities = 12/18 (66%), Positives = 13/18 (71%)
Frame = -1
Query: 332 CCYGCCALGARGCRRCCS 279
C YGCC G GC+RCCS
Sbjct: 76 CRYGCCRKGYNGCKRCCS 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,421,248
Number of Sequences: 1393205
Number of extensions: 9904541
Number of successful extensions: 19700
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19611
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
