Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001023A_C01 KMC001023A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_781782.1| conserved protein [Clostridium tetani E88] gi|2... 35 0.62
ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus] g... 35 1.1
ref|NP_711546.1| alginate o-acetyltransferase [Leptospira interr... 32 5.3
ref|NP_619511.1| conserved hypothetical protein [Methanosarcina ... 32 5.3
ref|ZP_00130774.1| hypothetical protein [Desulfovibrio desulfuri... 32 9.0
>ref|NP_781782.1| conserved protein [Clostridium tetani E88]
gi|28203277|gb|AAO35719.1| conserved protein
[Clostridium tetani E88]
Length = 360
Score = 35.4 bits (80), Expect = 0.62
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 108 KEMRDEVT*KRKNNLKFKCLGIRIAQKKVVQGKENLEKKEKDTEHLRSEKK 260
K++ D++ +KN K K I+ A+ K+ + K+ L+KK K+ E + +K
Sbjct: 131 KDLNDKIAHYKKNEFKEKLDSIKAAKTKLAEDKKKLDKKSKEFEDIIKREK 181
>ref|XP_283692.1| hypothetical protein XP_283692 [Mus musculus]
gi|26331786|dbj|BAC29623.1| unnamed protein product [Mus
musculus]
Length = 122
Score = 34.7 bits (78), Expect = 1.1
Identities = 21/48 (43%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Frame = -1
Query: 271 FPIIFFSLLRCSVSFSFFSKFSFPCTTFFWAILIPRHLNF-KLFFLFY 131
F +FFS L S F F SFP +FF++ L L F LFFLF+
Sbjct: 10 FSFLFFSFLFFSFLFFSFPFLSFPFLSFFFSFLFFSFLFFSSLFFLFF 57
>ref|NP_711546.1| alginate o-acetyltransferase [Leptospira interrogans serovar lai
str. 56601] gi|24194942|gb|AAN48564.1|AE011316_5
alginate o-acetyltransferase [Leptospira interrogans
serovar lai str. 56601]
Length = 510
Score = 32.3 bits (72), Expect = 5.3
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = -3
Query: 302 KSFYSLGYVPLSHHFFFTP*VFSVLLFFL*VFFSLYNFLLGNPYT*TFEFQIVFPLLCNL 123
K F + L+H FF FF FF+++ F + + + +++ V L N+
Sbjct: 377 KIFVKFKFPFLNHPFFIKG------FFFWSCFFTMFMFAMSSIFFRSYDGNHVKILFTNV 430
Query: 122 ISHFFV-TWPTETMRLEDYY*EILKI 48
+ +FF+ P + + + +Y EILK+
Sbjct: 431 VENFFILKGPNDQIGISNYSMEILKL 456
>ref|NP_619511.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A] gi|19918811|gb|AAM07991.1| conserved hypothetical
protein [Methanosarcina acetivorans str. C2A]
Length = 104
Score = 32.3 bits (72), Expect = 5.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 345 SLILYMDLLHFIIWKIILLSRLCAPFPSFFFHSLGVQCPSLFSLSFLFLV 196
S+ L++ + HF+ I+ L C F FH + V LFS+ FLF V
Sbjct: 18 SVFLFVSVFHFVSVSILFLFPFC-----FCFHFVSVSILFLFSILFLFSV 62
>ref|ZP_00130774.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 363
Score = 31.6 bits (70), Expect = 9.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 306 WKIILLSRLCAPFPSFFFHSLGVQCPS 226
WK++LL LC PF F F +LG++ S
Sbjct: 111 WKVLLLLALCEPFLLFTFETLGLRYTS 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,018,142
Number of Sequences: 1393205
Number of extensions: 10859091
Number of successful extensions: 25339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25185
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
