Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001021A_C01 KMC001021A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC31800.2| ATP-binding cassette transporter [Candida glabrata] 33 1.8
dbj|BAB02650.1| receptor-like serine/threonine kinase [Arabidops... 33 2.3
ref|NP_691837.1| enoyl reductase [Oceanobacillus iheyensis HTE83... 31 6.7
ref|XP_235256.1| similar to CG31626-PA [Drosophila melanogaster]... 31 8.8
gb|AAL59847.1|AF315508_1 ATP-binding cassette protein 2 [Cryptos... 31 8.8
>gb|AAC31800.2| ATP-binding cassette transporter [Candida glabrata]
Length = 1542
Score = 33.1 bits (74), Expect = 1.8
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 222 ECRYCNQLYFQLSFMNEGAANLRSPAYKRMKK*YLYGIF*C----DHLIGLVSLYWLS 383
EC +C Q S+ N+ A + S Y+R + YGIF C D++ G+ LYWL+
Sbjct: 1467 ECHFC-----QFSYTNDFLATVSSKYYRRWRN---YGIFICFIVFDYVAGIF-LYWLA 1515
>dbj|BAB02650.1| receptor-like serine/threonine kinase [Arabidopsis thaliana]
Length = 1042
Score = 32.7 bits (73), Expect = 2.3
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 387 SGLYSLHINCGGKMITSNGSVTFDDDSHEAGPG 485
S Y LHINCGG ITSN +D D+ + PG
Sbjct: 422 SAFYGLHINCGGNEITSN-ETKYDADTWDT-PG 452
>ref|NP_691837.1| enoyl reductase [Oceanobacillus iheyensis HTE831]
gi|22776597|dbj|BAC12872.1| enoyl reductase
[Oceanobacillus iheyensis HTE831]
Length = 132
Score = 31.2 bits (69), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 171 IGVHGNFAQGFFVLLLKECRYCNQLYFQLSFMNEGAA 281
+ +G+FA+G FVL++ E Y N Y Q + G A
Sbjct: 43 VNYYGSFAEGGFVLIITEDTYINDKYSQTYYDQPGIA 79
>ref|XP_235256.1| similar to CG31626-PA [Drosophila melanogaster] [Rattus norvegicus]
Length = 364
Score = 30.8 bits (68), Expect = 8.8
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 255 LSFMNEGAANLRSPAYKRMKK*YLYGIF*CDHLIGLVSLYWLSTSGLYSLHINCGGKMIT 434
+S M ++ SP YK KK L+G CDH++GL+++ ++ + + CGGK
Sbjct: 58 VSNMGNSYSDDSSPLYKEKKK-ELWGN--CDHMVGLIAVKFVMRHHIVA--EECGGKANV 112
Query: 435 SNG 443
+ G
Sbjct: 113 TRG 115
>gb|AAL59847.1|AF315508_1 ATP-binding cassette protein 2 [Cryptosporidium parvum]
Length = 1587
Score = 30.8 bits (68), Expect = 8.8
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 148 LLPRLCFI*EYMVILLKVFLFFFLKSVDIVTNYISSCLS*MKVLL-IFALLHTRG*KNNT 324
LL RLCF + +VIL +FL +F S + ISS VL F H+R +
Sbjct: 89 LLLRLCF--DILVILSSIFLSYFSTSSSTINAIISSLYMFSTVLFKSFFDCHSRIIVSRL 146
Query: 325 CMEFSNAIILLGL 363
C+ ++I + L
Sbjct: 147 CVRIEGSLIWIAL 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,269,867
Number of Sequences: 1393205
Number of extensions: 8751516
Number of successful extensions: 23197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23191
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
