Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001014A_C01 KMC001014A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL86482.1|AC077693_21 hypothetical protein [Oryza sativa (ja... 46 3e-04
dbj|BAC42966.1| unknown protein [Arabidopsis thaliana] 45 7e-04
ref|NP_193531.1| putative protein; protein id: At4g17970.1 [Arab... 45 7e-04
ref|NP_564753.1| expressed protein; protein id: At1g60060.1, sup... 44 0.001
ref|NP_199472.1| putative protein; protein id: At5g46600.1 [Arab... 40 0.018
>gb|AAL86482.1|AC077693_21 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 529
Score = 46.2 bits (108), Expect = 3e-04
Identities = 24/49 (48%), Positives = 32/49 (64%)
Frame = -1
Query: 413 EMHSIRAVAHPKEGHKKILRPLLSKIATTRLEFSKALPFAAITSMLLKM 267
E + +A + + LRP LSKIA T LEFS+ALPFAA S+L++M
Sbjct: 424 ERRNTKADQPSERNERGTLRPTLSKIAMTSLEFSEALPFAAFASLLVEM 472
>dbj|BAC42966.1| unknown protein [Arabidopsis thaliana]
Length = 104
Score = 44.7 bits (104), Expect = 7e-04
Identities = 23/37 (62%), Positives = 30/37 (80%), Gaps = 1/37 (2%)
Frame = -1
Query: 374 GHKKILRPLLSKIAT-TRLEFSKALPFAAITSMLLKM 267
G +++LRP LSKIA T LEFS+ALPFAA S+L++M
Sbjct: 18 GERRMLRPQLSKIAVMTSLEFSEALPFAAFASLLVEM 54
>ref|NP_193531.1| putative protein; protein id: At4g17970.1 [Arabidopsis thaliana]
gi|7487768|pir||T05083 hypothetical protein T6K21.150 -
Arabidopsis thaliana gi|2894606|emb|CAA17140.1| putative
protein [Arabidopsis thaliana]
gi|7268549|emb|CAB78799.1| putative protein [Arabidopsis
thaliana]
Length = 560
Score = 44.7 bits (104), Expect = 7e-04
Identities = 23/37 (62%), Positives = 30/37 (80%), Gaps = 1/37 (2%)
Frame = -1
Query: 374 GHKKILRPLLSKIAT-TRLEFSKALPFAAITSMLLKM 267
G +++LRP LSKIA T LEFS+ALPFAA S+L++M
Sbjct: 474 GERRMLRPQLSKIAVMTSLEFSEALPFAAFASLLVEM 510
>ref|NP_564753.1| expressed protein; protein id: At1g60060.1, supported by cDNA:
117804. [Arabidopsis thaliana] gi|25404259|pir||A96625
hypothetical protein T2K10.11 [imported] - Arabidopsis
thaliana gi|4249385|gb|AAD14482.1|AAD14482 T2K10.11
[Arabidopsis thaliana] gi|21537011|gb|AAM61352.1|
unknown [Arabidopsis thaliana]
Length = 386
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1
Query: 545 GLQPELFFKMSHEIYNYEEG 486
GLQPELFFKMSHEIYNY EG
Sbjct: 106 GLQPELFFKMSHEIYNYGEG 125
>ref|NP_199472.1| putative protein; protein id: At5g46600.1 [Arabidopsis thaliana]
gi|8885601|dbj|BAA97531.1|
gene_id:F10E10.8~pir||T05083~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 539
Score = 40.0 bits (92), Expect = 0.018
Identities = 22/37 (59%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = -1
Query: 374 GHKKILRPLLSKIATTR-LEFSKALPFAAITSMLLKM 267
G K+ LR LSKIA + LEFS+ALPFAA S+L++M
Sbjct: 467 GEKRRLRKQLSKIAVMKSLEFSEALPFAAFASLLVEM 503
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,503,758
Number of Sequences: 1393205
Number of extensions: 8560032
Number of successful extensions: 18376
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18373
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
