Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001013A_C03 KMC001013A_c03
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD16099.2| cyclic nucleotide-gated ion channel LCNG1 [Limulu... 35 0.62
ref|NP_611715.2| CG3536-PA [Drosophila melanogaster] gi|21645643... 33 1.4
gb|EAA04022.1| agCP3250 [Anopheles gambiae str. PEST] 33 1.4
gb|EAA38688.1| GLP_516_20938_24855 [Giardia lamblia ATCC 50803] 31 8.9
>gb|AAD16099.2| cyclic nucleotide-gated ion channel LCNG1 [Limulus polyphemus]
Length = 900
Score = 34.7 bits (78), Expect = 0.62
Identities = 19/53 (35%), Positives = 30/53 (55%)
Frame = -3
Query: 165 LNISAEFNCVAICYCLV*IYKYYWNVMDQAEKHTSCPGLLLFYASLIGHIVKV 7
L +S FN + C LV IY++ W +D+ E+HT+ P +F ++ H V V
Sbjct: 288 LYLSIGFNSILRCLRLVKIYRF-WTFLDRTERHTNYPN--VFRTVILTHYVLV 337
>ref|NP_611715.2| CG3536-PA [Drosophila melanogaster] gi|21645643|gb|AAF46899.2|
CG3536-PA [Drosophila melanogaster]
Length = 1218
Score = 33.5 bits (75), Expect = 1.4
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -3
Query: 165 LNISAEFNCVAICYCLV*IYKYYWNVMDQAEKHTSCPGL-----LLFYASLIGH 19
L +S FN + + LV IY++ W MD+ E+HT+ P L L+ Y +I H
Sbjct: 606 LYLSIGFNSILRSFRLVKIYRF-WAFMDRTERHTNYPNLFRSTALIHYLLVIFH 658
>gb|EAA04022.1| agCP3250 [Anopheles gambiae str. PEST]
Length = 596
Score = 33.5 bits (75), Expect = 1.4
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -3
Query: 165 LNISAEFNCVAICYCLV*IYKYYWNVMDQAEKHTSCPGL-----LLFYASLIGH 19
L +S FN + + LV IY++ W MD+ E+HT+ P L L+ Y +I H
Sbjct: 128 LYLSIGFNSILRSFRLVKIYRF-WAFMDRTERHTNYPNLFRSTSLIHYLLVIFH 180
>gb|EAA38688.1| GLP_516_20938_24855 [Giardia lamblia ATCC 50803]
Length = 1305
Score = 30.8 bits (68), Expect = 8.9
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 145 ELSTNIKSVSLTTERVLNLSHKQTNKIIHLVSVNFQQIELQGCPKRQ*AAARVK-PSSML 321
EL ++S+S RVL +++IHL Q +E +R+ +AR + S
Sbjct: 742 ELQAELESISAEAARVLQTMEANNSRLIHLKQQYAQSVECYNAQQREMQSARRQLERSRA 801
Query: 322 VIE------ITEERKYADHKSMLHR 378
++E T E K A+ S L R
Sbjct: 802 IVESSGLKLATLESKLAEMTSDLER 826
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,728,987
Number of Sequences: 1393205
Number of extensions: 7087960
Number of successful extensions: 17087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17085
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
