Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001012A_C01 KMC001012A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF08571.1|AC011623_4 unknown protein [Arabidopsis thaliana] 54 1e-06
ref|NP_187296.2| unknown protein; protein id: At3g06450.1, suppo... 54 1e-06
ref|NP_191786.1| putative protein; protein id: At3g62270.1, supp... 52 8e-06
pir||T02172 hypothetical protein F14M4.1 - Arabidopsis thaliana 47 2e-04
ref|NP_182238.2| putative anion exchange protein; protein id: At... 47 2e-04
>gb|AAF08571.1|AC011623_4 unknown protein [Arabidopsis thaliana]
Length = 736
Score = 54.3 bits (129), Expect = 1e-06
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Frame = -3
Query: 595 DGMITRSRGEFRRVGSLKV-----VSSXGTPS-------QELTGIQSPRFSDKVYSPRVN 452
DGM TRSRGE R+V SLK+ S+ G+P+ + + Q+PR S+KVY ++
Sbjct: 636 DGMFTRSRGEIRKVSSLKLGGGGSGSTVGSPAGGGVELMRRVVSFQNPRVSEKVYIRSLS 695
Query: 451 PLRENH--SPR-GVGRGPFSP--------GEAKPSNLRKS 365
R SPR GR PFSP GE + SNL KS
Sbjct: 696 DFRGGGEISPRSSAGRAPFSPRSATGGGGGEQRLSNLGKS 735
>ref|NP_187296.2| unknown protein; protein id: At3g06450.1, supported by cDNA:
gi_16604463 [Arabidopsis thaliana]
gi|16604464|gb|AAL24238.1| AT3g06450/F24P17_6
[Arabidopsis thaliana] gi|23308463|gb|AAN18201.1|
At3g06450/F24P17_6 [Arabidopsis thaliana]
Length = 732
Score = 54.3 bits (129), Expect = 1e-06
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Frame = -3
Query: 595 DGMITRSRGEFRRVGSLKV-----VSSXGTPS-------QELTGIQSPRFSDKVYSPRVN 452
DGM TRSRGE R+V SLK+ S+ G+P+ + + Q+PR S+KVY ++
Sbjct: 632 DGMFTRSRGEIRKVSSLKLGGGGSGSTVGSPAGGGVELMRRVVSFQNPRVSEKVYIRSLS 691
Query: 451 PLRENH--SPR-GVGRGPFSP--------GEAKPSNLRKS 365
R SPR GR PFSP GE + SNL KS
Sbjct: 692 DFRGGGEISPRSSAGRAPFSPRSATGGGGGEQRLSNLGKS 731
>ref|NP_191786.1| putative protein; protein id: At3g62270.1, supported by cDNA:
gi_18377738, supported by cDNA: gi_20465400 [Arabidopsis
thaliana] gi|11358070|pir||T48019 hypothetical protein
T17J13.230 - Arabidopsis thaliana
gi|6899937|emb|CAB71887.1| putative protein [Arabidopsis
thaliana] gi|18377739|gb|AAL67019.1| unknown protein
[Arabidopsis thaliana] gi|20465401|gb|AAM20125.1|
unknown protein [Arabidopsis thaliana]
Length = 703
Score = 51.6 bits (122), Expect = 8e-06
Identities = 37/77 (48%), Positives = 40/77 (51%)
Frame = -3
Query: 595 DGMITRSRGEFRRVGSLKVVSSXGTPSQELTGIQSPRFSDKVYSPRVNPLRENHSPRGVG 416
D ITRSRGEFR S KV SS TP R +V+SPRV LR SPR G
Sbjct: 633 DEFITRSRGEFRHTCSPKVTSSTSTPVYN-------RNLSQVFSPRVIDLRGEMSPRLSG 685
Query: 415 RGPFSPGEAKPSNLRKS 365
+G SP KPS L S
Sbjct: 686 KGQNSP---KPSPLNPS 699
>pir||T02172 hypothetical protein F14M4.1 - Arabidopsis thaliana
Length = 344
Score = 46.6 bits (109), Expect = 2e-04
Identities = 33/78 (42%), Positives = 40/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 595 DGMITRSRGEFRRVGSLKVVSSXGTPSQELTGIQSPRFSDKVYSPRVNPLRENH-SPRGV 419
D ++TRSRGEFR S KV SS TP R +V+SPRV+ +R SPR V
Sbjct: 272 DEVMTRSRGEFRHTSSPKVTSSSSTPVNN-------RSLSQVFSPRVSGIRLGQMSPRVV 324
Query: 418 GRGPFSPGEAKPSNLRKS 365
G P P S L +S
Sbjct: 325 GNSP-KPASCGRSPLNQS 341
>ref|NP_182238.2| putative anion exchange protein; protein id: At2g47160.1, supported
by cDNA: gi_17979132, supported by cDNA: gi_20465344
[Arabidopsis thaliana] gi|17979133|gb|AAL49824.1|
putative anion exchange protein [Arabidopsis thaliana]
gi|20465345|gb|AAM20076.1| putative anion exchange
protein [Arabidopsis thaliana]
gi|23397182|gb|AAN31874.1| putative anion exchange
protein [Arabidopsis thaliana]
gi|23495359|dbj|BAC20173.1| BOR1 [Arabidopsis thaliana]
Length = 704
Score = 46.6 bits (109), Expect = 2e-04
Identities = 33/78 (42%), Positives = 40/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 595 DGMITRSRGEFRRVGSLKVVSSXGTPSQELTGIQSPRFSDKVYSPRVNPLRENH-SPRGV 419
D ++TRSRGEFR S KV SS TP R +V+SPRV+ +R SPR V
Sbjct: 632 DEVMTRSRGEFRHTSSPKVTSSSSTPVNN-------RSLSQVFSPRVSGIRLGQMSPRVV 684
Query: 418 GRGPFSPGEAKPSNLRKS 365
G P P S L +S
Sbjct: 685 GNSP-KPASCGRSPLNQS 701
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,025,438
Number of Sequences: 1393205
Number of extensions: 11067982
Number of successful extensions: 25742
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25717
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
