Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001010A_C01 KMC001010A_c01
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_812955.1| putative dolichol-P-glucose synthetase [Bactero... 33 3.7
gb|EAA22872.1| Plasmodium falciparum MB2 [Plasmodium yoelii yoelii] 33 3.7
gb|AAA62273.1| ORF2 32 6.3
gb|EAA30037.1| predicted protein [Neurospora crassa] 32 6.3
>ref|NP_812955.1| putative dolichol-P-glucose synthetase [Bacteroides
thetaiotaomicron VPI-5482] gi|29341361|gb|AAO79149.1|
putative dolichol-P-glucose synthetase [Bacteroides
thetaiotaomicron VPI-5482]
Length = 328
Score = 33.1 bits (74), Expect = 3.7
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Frame = -3
Query: 647 HLMRQIIFLII*PCFRTYSKLLIF*EIVLFFK-----LVENI*CTISLVQTY*FLTIFLC 483
+L+ + F I+ CF LL + LFF V NI I ++ + +F+
Sbjct: 164 YLLTSVWFYIVLFCFIGVVVLLYYLRKTLFFYERVKGFVLNIWEGIMSLKGVRNIPLFIF 223
Query: 482 FKLVVSLCFFFFFYL*IYCW 423
+ L + C+FF FY YC+
Sbjct: 224 YTLAIWACYFFHFYFTFYCF 243
>gb|EAA22872.1| Plasmodium falciparum MB2 [Plasmodium yoelii yoelii]
Length = 1113
Score = 33.1 bits (74), Expect = 3.7
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 292 YNTNI---QSINLKIEKILVDE*PLKIYLMLQRTSNWQKWDGNYSISQQYIHK*KKKKKH 462
Y TN+ S+++K E L ++ P ++ L+ + +K D N + S YI+ KKK +
Sbjct: 281 YKTNVINSMSLDVKQEN-LTNKFPKEVLNNLEDLNCIEKKDANLNNSHNYINIKKKKNNN 339
Query: 463 KLTTNLKHKKI 495
K+ NL+ KI
Sbjct: 340 KIVYNLEDDKI 350
>gb|AAA62273.1| ORF2
Length = 141
Score = 32.3 bits (72), Expect = 6.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 491 FLCFKLVVSLCFFFFFYL*IYCWLME*FPSHFCQLEVL 378
F+CF +VV CFF F++ I+ W + FC + +L
Sbjct: 38 FICFVIVV--CFFLLFWVVIFYWCFDCIVYFFCDVIIL 73
>gb|EAA30037.1| predicted protein [Neurospora crassa]
Length = 414
Score = 32.3 bits (72), Expect = 6.3
Identities = 14/44 (31%), Positives = 21/44 (46%)
Frame = -1
Query: 508 TNS*QSSYVLSWLLVYVFFFFFTCEYIVGLWNNFHPTFASWKFS 377
TN +++ + WL ++ F FT Y+ F FA W FS
Sbjct: 284 TNRWRTTRWIIWLCIFSLMFIFTWPYLFFRTKRFETVFADWHFS 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,008,977
Number of Sequences: 1393205
Number of extensions: 11209751
Number of successful extensions: 24277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24168
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
