Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001008A_C01 KMC001008A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06405 resistance complex protein I2C-3 - tomato (fragment)... 34 1.4
ref|NP_617005.1| cation efflux system protein [Methanosarcina ac... 32 6.9
>pir||T06405 resistance complex protein I2C-3 - tomato (fragment)
gi|2258319|gb|AAB63276.1| resistance complex protein
I2C-3 [Lycopersicon esculentum]
Length = 373
Score = 33.9 bits (76), Expect = 1.4
Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Frame = -2
Query: 489 LESLKIWGCSVLR---NQGELEDWDNIAHVPRVYIGWWR 382
L L I C +L+ G+ E W NIAH+P +YI W R
Sbjct: 334 LSELAISKCPLLKPLLEFGKGEYWPNIAHIPSIYIDWER 372
>ref|NP_617005.1| cation efflux system protein [Methanosarcina acetivorans str. C2A]
gi|19916011|gb|AAM05485.1| cation efflux system protein
[Methanosarcina acetivorans str. C2A]
Length = 411
Score = 31.6 bits (70), Expect = 6.9
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = -1
Query: 247 DQWHQRDSINQFKCNVGNLK-TSTRDHYKLRALGVVMVTSIQV 122
D W +DSI + + NVG+++ T D +LR G+V+ I++
Sbjct: 208 DAWLDKDSIERIRQNVGSIQGVKTVDEIRLRKSGLVVFGEIEI 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,709,287
Number of Sequences: 1393205
Number of extensions: 9460545
Number of successful extensions: 21510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21508
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
