Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001002A_C02 KMC001002A_c02
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02172 hypothetical protein F14M4.1 - Arabidopsis thaliana 86 3e-16
ref|NP_182238.2| putative anion exchange protein; protein id: At... 86 3e-16
ref|NP_191786.1| putative protein; protein id: At3g62270.1, supp... 75 6e-13
gb|AAF08571.1|AC011623_4 unknown protein [Arabidopsis thaliana] 40 0.022
ref|NP_187296.2| unknown protein; protein id: At3g06450.1, suppo... 40 0.022
>pir||T02172 hypothetical protein F14M4.1 - Arabidopsis thaliana
Length = 344
Score = 85.9 bits (211), Expect = 3e-16
Identities = 52/107 (48%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Frame = -2
Query: 583 LPFNIAAQSEFGGGASHIGESEILDEVITRSRGEFRHTSSPRITSSTPTPGN--ETKSHL 410
LPFN+AA++E G S+ G+ EILDEV+TRSRGEFRHTSSP++TSS+ TP N
Sbjct: 248 LPFNLAAETEIGSTTSYPGDLEILDEVMTRSRGEFRHTSSPKVTSSSSTPVNNRSLSQVF 307
Query: 409 SPNLSFNSRMGEFTTEPSPRSGARGPSPKAREVRLSSLGRSPLDPDS 269
SP +S R+G+ SPR P P +S GRSPL+ S
Sbjct: 308 SPRVS-GIRLGQM----SPRVVGNSPKP-------ASCGRSPLNQSS 342
>ref|NP_182238.2| putative anion exchange protein; protein id: At2g47160.1, supported
by cDNA: gi_17979132, supported by cDNA: gi_20465344
[Arabidopsis thaliana] gi|17979133|gb|AAL49824.1|
putative anion exchange protein [Arabidopsis thaliana]
gi|20465345|gb|AAM20076.1| putative anion exchange
protein [Arabidopsis thaliana]
gi|23397182|gb|AAN31874.1| putative anion exchange
protein [Arabidopsis thaliana]
gi|23495359|dbj|BAC20173.1| BOR1 [Arabidopsis thaliana]
Length = 704
Score = 85.9 bits (211), Expect = 3e-16
Identities = 52/107 (48%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Frame = -2
Query: 583 LPFNIAAQSEFGGGASHIGESEILDEVITRSRGEFRHTSSPRITSSTPTPGN--ETKSHL 410
LPFN+AA++E G S+ G+ EILDEV+TRSRGEFRHTSSP++TSS+ TP N
Sbjct: 608 LPFNLAAETEIGSTTSYPGDLEILDEVMTRSRGEFRHTSSPKVTSSSSTPVNNRSLSQVF 667
Query: 409 SPNLSFNSRMGEFTTEPSPRSGARGPSPKAREVRLSSLGRSPLDPDS 269
SP +S R+G+ SPR P P +S GRSPL+ S
Sbjct: 668 SPRVS-GIRLGQM----SPRVVGNSPKP-------ASCGRSPLNQSS 702
>ref|NP_191786.1| putative protein; protein id: At3g62270.1, supported by cDNA:
gi_18377738, supported by cDNA: gi_20465400 [Arabidopsis
thaliana] gi|11358070|pir||T48019 hypothetical protein
T17J13.230 - Arabidopsis thaliana
gi|6899937|emb|CAB71887.1| putative protein [Arabidopsis
thaliana] gi|18377739|gb|AAL67019.1| unknown protein
[Arabidopsis thaliana] gi|20465401|gb|AAM20125.1|
unknown protein [Arabidopsis thaliana]
Length = 703
Score = 75.1 bits (183), Expect = 6e-13
Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Frame = -2
Query: 583 LPFNIAA-QSEFGGGASHIGESEILDEVITRSRGEFRHTSSPRITSSTPTPGNETKSHLS 407
LPF++A ++E G AS+ +SEILDE ITRSRGEFRHT SP++TSST TP +
Sbjct: 608 LPFHLAVPEAEMGSTASYPCDSEILDEFITRSRGEFRHTCSPKVTSSTSTP------VYN 661
Query: 406 PNLS--FNSRMGEFTTEPSPRSGARGP-SPKAREVRLSSLGRSPLDPDSKQK 260
NLS F+ R+ + E SPR +G SPK SPL+P S K
Sbjct: 662 RNLSQVFSPRVIDLRGEMSPRLSGKGQNSPKP----------SPLNPSSSSK 703
>gb|AAF08571.1|AC011623_4 unknown protein [Arabidopsis thaliana]
Length = 736
Score = 40.0 bits (92), Expect = 0.022
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Frame = -2
Query: 583 LPFNIAAQSEFGGGASHIGESEILDEVITRSRGEFRHTSSPRI-------TSSTPTPG-- 431
L FN+ + E S E++D + TRSRGE R SS ++ T +P G
Sbjct: 612 LSFNLKPEGEVSRATSFADSGEVMDGMFTRSRGEIRKVSSLKLGGGGSGSTVGSPAGGGV 671
Query: 430 ---NETKSHLSPNLS---FNSRMGEFT--TEPSPRSGA-RGP-SPKAR------EVRLSS 299
S +P +S + + +F E SPRS A R P SP++ E RLS+
Sbjct: 672 ELMRRVVSFQNPRVSEKVYIRSLSDFRGGGEISPRSSAGRAPFSPRSATGGGGGEQRLSN 731
Query: 298 LGRS 287
LG+S
Sbjct: 732 LGKS 735
>ref|NP_187296.2| unknown protein; protein id: At3g06450.1, supported by cDNA:
gi_16604463 [Arabidopsis thaliana]
gi|16604464|gb|AAL24238.1| AT3g06450/F24P17_6
[Arabidopsis thaliana] gi|23308463|gb|AAN18201.1|
At3g06450/F24P17_6 [Arabidopsis thaliana]
Length = 732
Score = 40.0 bits (92), Expect = 0.022
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Frame = -2
Query: 583 LPFNIAAQSEFGGGASHIGESEILDEVITRSRGEFRHTSSPRI-------TSSTPTPG-- 431
L FN+ + E S E++D + TRSRGE R SS ++ T +P G
Sbjct: 608 LSFNLKPEGEVSRATSFADSGEVMDGMFTRSRGEIRKVSSLKLGGGGSGSTVGSPAGGGV 667
Query: 430 ---NETKSHLSPNLS---FNSRMGEFT--TEPSPRSGA-RGP-SPKAR------EVRLSS 299
S +P +S + + +F E SPRS A R P SP++ E RLS+
Sbjct: 668 ELMRRVVSFQNPRVSEKVYIRSLSDFRGGGEISPRSSAGRAPFSPRSATGGGGGEQRLSN 727
Query: 298 LGRS 287
LG+S
Sbjct: 728 LGKS 731
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,236,283
Number of Sequences: 1393205
Number of extensions: 9796731
Number of successful extensions: 30533
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 28806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30476
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
