Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000998A_C01 KMC000998A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89799.1| putative DNA polymerase alpha catalytic subunit ... 99 5e-20
sp|O48653|DPOA_ORYSA DNA polymerase alpha catalytic subunit gi|2... 99 5e-20
ref|NP_201511.1| DNA polymerase alpha 1; protein id: At5g67100.1... 97 3e-19
gb|EAA33895.1| hypothetical protein [Neurospora crassa] 42 0.006
gb|EAA00974.1| agCP12303 [Anopheles gambiae str. PEST] 38 0.14
>dbj|BAB89799.1| putative DNA polymerase alpha catalytic subunit [Oryza sativa
(japonica cultivar-group)]
Length = 1637
Score = 99.0 bits (245), Expect = 5e-20
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = -1
Query: 675 RKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDR 496
R+YTEADLY+QLSYFC+V D C+EKL++K+R+P EKE + ++ VQK+RDR
Sbjct: 1563 RQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDR 1622
Query: 495 CAYGWVKLEDLVISI 451
CA+GWV+L+DL ISI
Sbjct: 1623 CAFGWVQLKDLAISI 1637
>sp|O48653|DPOA_ORYSA DNA polymerase alpha catalytic subunit gi|2826900|dbj|BAA24573.1| DNA
polymerase alpha catalytic subunit [Oryza sativa]
Length = 1243
Score = 99.0 bits (245), Expect = 5e-20
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = -1
Query: 675 RKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDR 496
R+YTEADLY+QLSYFC+V D C+EKL++K+R+P EKE + ++ VQK+RDR
Sbjct: 1169 RQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDR 1228
Query: 495 CAYGWVKLEDLVISI 451
CA+GWV+L+DL ISI
Sbjct: 1229 CAFGWVQLKDLAISI 1243
>ref|NP_201511.1| DNA polymerase alpha 1; protein id: At5g67100.1 [Arabidopsis
thaliana] gi|10177597|dbj|BAB10944.1| DNA polymerase
alpha 1 [Arabidopsis thaliana]
Length = 1492
Score = 96.7 bits (239), Expect = 3e-19
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -1
Query: 675 RKYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDR 496
RKYTEADLYKQLSYFCH+ DT +EK++ RI VEK + KIRP V A+ + RDR
Sbjct: 1420 RKYTEADLYKQLSYFCHILDTQCSLEKMDVGVRIQVEKAMTKIRPAVKSAAAITRSSRDR 1479
Query: 495 CAYGWVKLEDLVI 457
CAYGW++L D+VI
Sbjct: 1480 CAYGWMQLTDIVI 1492
>gb|EAA33895.1| hypothetical protein [Neurospora crassa]
Length = 1473
Score = 42.4 bits (98), Expect = 0.006
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Frame = -1
Query: 672 KYTEADLYKQLSYFCHVFDTASCIEK---------------LEEKSRIPVEKELIKIRPI 538
+YTE D+Y QL YF ++D K EEK R+ + E ++R
Sbjct: 1382 EYTERDIYNQLVYFASLWDVDKAKSKAKENNDEDVDAAKLSAEEKERVAIMAEHNRVR-- 1439
Query: 537 VDPVASTVQKMRDRCAYGWVKLEDLVISI*FV 442
V V+K D+C WV ++ L + FV
Sbjct: 1440 FGTVKGVVEKYLDKCGRRWVAMDTLFAKLGFV 1471
>gb|EAA00974.1| agCP12303 [Anopheles gambiae str. PEST]
Length = 1565
Score = 37.7 bits (86), Expect = 0.14
Identities = 22/69 (31%), Positives = 37/69 (52%)
Frame = -1
Query: 672 KYTEADLYKQLSYFCHVFDTASCIEKLEEKSRIPVEKELIKIRPIVDPVASTVQKMRDRC 493
+Y+E DLY QL Y+ ++FD KL + +P + IR + + + TV++ + R
Sbjct: 1474 QYSETDLYNQLCYYLYMFDLEQYSPKLTK--ALPPD-----IRNMYNRLKETVERFQQRS 1526
Query: 492 AYGWVKLED 466
YG V L +
Sbjct: 1527 KYGVVNLSN 1535
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,346,802
Number of Sequences: 1393205
Number of extensions: 12540818
Number of successful extensions: 30025
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29897
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
