Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000996A_C01 KMC000996A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194714.1| putative protein; protein id: At4g29850.1 [Arab... 172 3e-42
ref|NP_565449.1| expressed protein; protein id: At2g19350.1, sup... 164 4e-40
ref|XP_215838.1| similar to chromosome 20 open reading frame 30;... 74 1e-12
emb|CAC33879.1| dJ1116H23.2.1 (HSPC274) [Homo sapiens] 73 2e-12
gb|AAH09768.1|AAH09768 Similar to RIKEN cDNA 5730494N06 gene [Ho... 73 2e-12
>ref|NP_194714.1| putative protein; protein id: At4g29850.1 [Arabidopsis thaliana]
gi|7486233|pir||T08546 hypothetical protein F27B13.90 -
Arabidopsis thaliana gi|4914409|emb|CAB43660.1| putative
protein [Arabidopsis thaliana]
gi|7269884|emb|CAB79743.1| putative protein [Arabidopsis
thaliana]
Length = 103
Score = 172 bits (435), Expect = 3e-42
Identities = 82/99 (82%), Positives = 88/99 (88%), Gaps = 1/99 (1%)
Frame = -3
Query: 514 DHAFSITDEDLF-ETSYTVNNKPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHVGGDRAHG 338
DHAFSITDED+ ETSYTVNN+PP+KEI LAV+LLVFG LGIV G MAYN VGGDR HG
Sbjct: 5 DHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRGHG 64
Query: 337 LFFAILGMLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 221
+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV
Sbjct: 65 IFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103
>ref|NP_565449.1| expressed protein; protein id: At2g19350.1, supported by cDNA:
37787. [Arabidopsis thaliana] gi|7486238|pir||T01283
hypothetical protein At2g19350 [imported] - Arabidopsis
thaliana gi|3135265|gb|AAC16465.1| expressed protein
[Arabidopsis thaliana] gi|21593287|gb|AAM65236.1|
unknown [Arabidopsis thaliana]
gi|28393155|gb|AAO42010.1| unknown protein [Arabidopsis
thaliana] gi|28827522|gb|AAO50605.1| unknown protein
[Arabidopsis thaliana]
Length = 103
Score = 164 bits (416), Expect = 4e-40
Identities = 79/99 (79%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Frame = -3
Query: 514 DHAFSITDEDLF-ETSYTVNNKPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHVGGDRAHG 338
DHAFSI+DEDL TSYTV+N+PP+KEI LAV LLVFG LGIV+G MAYN VGGDR HG
Sbjct: 5 DHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHG 64
Query: 337 LFFAILGMLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 221
+FF +LG LLFIPGFYYTRIAYYAYKGYKGFSFSNIP V
Sbjct: 65 IFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103
>ref|XP_215838.1| similar to chromosome 20 open reading frame 30; HSPC274 protein
[Homo sapiens] [Rattus norvegicus]
Length = 120
Score = 73.6 bits (179), Expect = 1e-12
Identities = 41/96 (42%), Positives = 60/96 (61%), Gaps = 4/96 (4%)
Frame = -3
Query: 502 SITDEDLFETSYTVNN-KPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHV---GGDRAHGL 335
S TD+ + + + K P K I LA L + G I+IGSL+ ++ G DRA +
Sbjct: 23 SSTDDGYIDLQFKKSPPKIPYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPV 82
Query: 334 FFAILGMLLFIPGFYYTRIAYYAYKGYKGFSFSNIP 227
I+G+L+F+PGFY+ RIAYYA KGY+G+S+ +IP
Sbjct: 83 L--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116
>emb|CAC33879.1| dJ1116H23.2.1 (HSPC274) [Homo sapiens]
Length = 87
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/79 (48%), Positives = 53/79 (66%), Gaps = 3/79 (3%)
Frame = -3
Query: 454 KPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHV---GGDRAHGLFFAILGMLLFIPGFYYT 284
K P K I LA L + G I+IGSL+ ++ G DRA + I+G+L+F+PGFY+
Sbjct: 7 KIPYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHL 64
Query: 283 RIAYYAYKGYKGFSFSNIP 227
RIAYYA KGY+G+S+ +IP
Sbjct: 65 RIAYYASKGYRGYSYDDIP 83
>gb|AAH09768.1|AAH09768 Similar to RIKEN cDNA 5730494N06 gene [Homo sapiens]
gi|14602519|gb|AAH09769.1|AAH09769 Similar to RIKEN cDNA
5730494N06 gene [Homo sapiens]
gi|14602521|gb|AAH09770.1|AAH09770 Similar to RIKEN cDNA
5730494N06 gene [Homo sapiens]
gi|15929358|gb|AAH15113.1|AAH15113 HSPC274 protein [Homo
sapiens]
Length = 120
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/79 (48%), Positives = 53/79 (66%), Gaps = 3/79 (3%)
Frame = -3
Query: 454 KPPIKEIGLAVSLLVFGVLGIVIGSLMAYNHV---GGDRAHGLFFAILGMLLFIPGFYYT 284
K P K I LA L + G I+IGSL+ ++ G DRA + I+G+L+F+PGFY+
Sbjct: 40 KIPYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHL 97
Query: 283 RIAYYAYKGYKGFSFSNIP 227
RIAYYA KGY+G+S+ +IP
Sbjct: 98 RIAYYASKGYRGYSYDDIP 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,974,781
Number of Sequences: 1393205
Number of extensions: 9848064
Number of successful extensions: 62703
Number of sequences better than 10.0: 331
Number of HSP's better than 10.0 without gapping: 48960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59548
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
