Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000994A_C01 KMC000994A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176708.1| acyl carrier protein, putative; protein id: At1... 165 4e-40
gb|AAM62469.1| acyl carrier protein, putative [Arabidopsis thali... 165 4e-40
ref|NP_181990.1| acyl carrier protein; protein id: At2g44620.1, ... 113 1e-24
gb|AAK96481.1| At2g44620/F16B22.11 [Arabidopsis thaliana] gi|169... 110 1e-23
dbj|BAC45189.1| putative acyl carrier protein [Oryza sativa (jap... 109 2e-23
>ref|NP_176708.1| acyl carrier protein, putative; protein id: At1g65290.1, supported
by cDNA: 14066. [Arabidopsis thaliana]
gi|7442279|pir||T02351 probable acyl carrier protein
T8F5.6 - Arabidopsis thaliana
gi|3335337|gb|AAC27139.1|AAC27139 Similar to acyl
carrier protein, mitochondrial precursor (ACP)
NADH-ubiquinone oxidoreductase 9.6 KD subunit (MYACP-1),
gb|L23574 from A. thaliana. ESTs gb|Z30712, gb|Z30713,
gb|Z26204, gb|N37975 and gb|N96330 come from this gene.
[Arabidopsis thaliana]
Length = 126
Score = 165 bits (417), Expect = 4e-40
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = -2
Query: 547 FSEEFRGSFLDKSEVTDRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEE 368
FSEE RGSFLDKSEVTDRV+S VKNFQKVDPSKVTP A+FQNDLGLDSLDSVE+VMALEE
Sbjct: 36 FSEEVRGSFLDKSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEE 95
Query: 367 EFGFEIPDNEADKINSIKLAVDFIASHPQAK 275
EFGFEIPDNEADKI SI LAVDFIASHPQAK
Sbjct: 96 EFGFEIPDNEADKIQSIDLAVDFIASHPQAK 126
>gb|AAM62469.1| acyl carrier protein, putative [Arabidopsis thaliana]
Length = 126
Score = 165 bits (417), Expect = 4e-40
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = -2
Query: 547 FSEEFRGSFLDKSEVTDRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEE 368
FSEE RGSFLDKSEVTDRV+S VKNFQKVDPSKVTP A+FQNDLGLDSLDSVE+VMALEE
Sbjct: 36 FSEEVRGSFLDKSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEE 95
Query: 367 EFGFEIPDNEADKINSIKLAVDFIASHPQAK 275
EFGFEIPDNEADKI SI LAVDFIASHPQAK
Sbjct: 96 EFGFEIPDNEADKIQSIDLAVDFIASHPQAK 126
>ref|NP_181990.1| acyl carrier protein; protein id: At2g44620.1, supported by cDNA:
gi_15450374, supported by cDNA: gi_16974476, supported
by cDNA: gi_468265 [Arabidopsis thaliana]
gi|1703091|sp|P53665|ACPM_ARATH Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1)
gi|7442278|pir||T01589 acyl carrier protein At2g44620
[imported] - Arabidopsis thaliana
gi|903689|gb|AAB96840.1| acyl carrier protein precursor
[Arabidopsis thaliana] gi|3341682|gb|AAC27464.1| acyl
carrier protein [Arabidopsis thaliana]
Length = 122
Score = 113 bits (283), Expect = 1e-24
Identities = 53/81 (65%), Positives = 65/81 (79%)
Frame = -2
Query: 520 LDKSEVTDRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDN 341
L + V DRV+ VK+F KVDPSKVTP HFQNDLGLDSLD+VEIVMA+EEEF EIPD
Sbjct: 41 LSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDK 100
Query: 340 EADKINSIKLAVDFIASHPQA 278
EADKI+S LA++++ +HP +
Sbjct: 101 EADKIDSCSLAIEYVYNHPMS 121
>gb|AAK96481.1| At2g44620/F16B22.11 [Arabidopsis thaliana]
gi|16974477|gb|AAL31242.1| At2g44620/F16B22.11
[Arabidopsis thaliana]
Length = 122
Score = 110 bits (275), Expect = 1e-23
Identities = 52/81 (64%), Positives = 64/81 (78%)
Frame = -2
Query: 520 LDKSEVTDRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDN 341
L + V DRV+ VK+F KVD SKVTP HFQNDLGLDSLD+VEIVMA+EEEF EIPD
Sbjct: 41 LSREAVVDRVLDVVKSFPKVDSSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDK 100
Query: 340 EADKINSIKLAVDFIASHPQA 278
EADKI+S LA++++ +HP +
Sbjct: 101 EADKIDSCSLAIEYVYNHPMS 121
>dbj|BAC45189.1| putative acyl carrier protein [Oryza sativa (japonica
cultivar-group)] gi|29367405|gb|AAO72575.1| acyl carrier
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 131
Score = 109 bits (272), Expect = 2e-23
Identities = 50/81 (61%), Positives = 66/81 (80%)
Frame = -2
Query: 520 LDKSEVTDRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDN 341
L + EV DR++ +K KVDPSKV+P AHF+ DLGLDSLD+VE+VMA+EEEF EIPD
Sbjct: 50 LTRDEVVDRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIEEEFKLEIPDQ 109
Query: 340 EADKINSIKLAVDFIASHPQA 278
EADKI+S+ LA++++A+HP A
Sbjct: 110 EADKIDSLPLAIEYVANHPMA 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,109,215
Number of Sequences: 1393205
Number of extensions: 9696518
Number of successful extensions: 24770
Number of sequences better than 10.0: 346
Number of HSP's better than 10.0 without gapping: 23862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24755
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
