Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000990A_C01 KMC000990A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191790.1| ATP-dependent RNA helicase-like protein; protei... 260 2e-72
ref|NP_182247.1| putative pre-mRNA splicing factor RNA helicase;... 236 4e-65
ref|NP_031865.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15... 188 4e-47
gb|AAH03745.1| Similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polyp... 188 4e-47
sp|O43143|DD15_HUMAN Putative pre-mRNA splicing factor RNA helic... 188 4e-47
>ref|NP_191790.1| ATP-dependent RNA helicase-like protein; protein id: At3g62310.1
[Arabidopsis thaliana] gi|11346355|pir||T48023
ATP-dependent RNA helicase-like protein - Arabidopsis
thaliana gi|7340702|emb|CAB82945.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
gi|21539575|gb|AAM53340.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 726
Score = 260 bits (664), Expect(2) = 2e-72
Identities = 128/149 (85%), Positives = 137/149 (91%)
Frame = +1
Query: 103 HSLINHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIP 282
+SLIN W GKPYSQRYYDILEKR+TLPVWLQKEEF K L NQTLILVGETGSGKTTQIP
Sbjct: 36 NSLINKWNGKPYSQRYYDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIP 95
Query: 283 QFVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 462
QFV++AVD E+ D+R K +V CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS
Sbjct: 96 QFVIDAVDAETSDKRRKWLVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 155
Query: 463 SKTVLKYLTDGMLLREAMADPLLDRYKVI 549
+TVLKYLTDGMLLREAMADPLL+RYKVI
Sbjct: 156 PRTVLKYLTDGMLLREAMADPLLERYKVI 184
Score = 34.3 bits (77), Expect(2) = 2e-72
Identities = 17/27 (62%), Positives = 22/27 (80%), Gaps = 2/27 (7%)
Frame = +2
Query: 26 SERKRKVSLFDVVDD--SAVKMAKTNG 100
+ERKRK+SLFDV+DD + K AKT+G
Sbjct: 3 TERKRKISLFDVMDDPSAPAKNAKTSG 29
>ref|NP_182247.1| putative pre-mRNA splicing factor RNA helicase; protein id:
At2g47250.1 [Arabidopsis thaliana]
gi|3913425|sp|O22899|DD15_ARATH Putative pre-mRNA
splicing factor ATP-dependent RNA helicase
gi|25409033|pir||H84912 probable pre-mRNA splicing
factor RNA helicase [imported] - Arabidopsis thaliana
gi|2275203|gb|AAB63825.1| putative pre-mRNA splicing
factor RNA helicase [Arabidopsis thaliana]
gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9
[Arabidopsis thaliana] gi|28416499|gb|AAO42780.1|
At2g47250/T8I13.9 [Arabidopsis thaliana]
Length = 729
Score = 236 bits (602), Expect(2) = 4e-65
Identities = 115/148 (77%), Positives = 132/148 (88%)
Frame = +1
Query: 106 SLINHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIPQ 285
+LIN W GK YSQRY++ILEKR+ LPVWLQK++F L NQTLILVGETGSGKTTQIPQ
Sbjct: 41 NLINKWNGKAYSQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQ 100
Query: 286 FVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSS 465
FVL+AV ++ D+ K +V CTQPRRVAAMSVSRRVA+EMDV+IGEEVGYSIRFEDC+SS
Sbjct: 101 FVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSS 160
Query: 466 KTVLKYLTDGMLLREAMADPLLDRYKVI 549
+T+LKYLTDGMLLREAMADPLL+RYKVI
Sbjct: 161 RTMLKYLTDGMLLREAMADPLLERYKVI 188
Score = 33.9 bits (76), Expect(2) = 4e-65
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 26 SERKRKVSLFDVVDDSAV--KMAKTNGATAS*TTGPGN 133
+ERKRKVSLFDV++D ++ K K+NG + G G+
Sbjct: 3 TERKRKVSLFDVMEDPSLSSKNTKSNGLGLAAAAGGGS 40
>ref|NP_031865.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15 (RNA helicase A)
[Mus musculus] gi|3913430|sp|O35286|DD15_MOUSE Putative
pre-mRNA splicing factor RNA helicase (DEAH box protein
15) gi|2407195|gb|AAC36129.1| putative RNA helicase and
RNA dependent ATPase [Mus musculus]
Length = 758
Score = 188 bits (477), Expect = 4e-47
Identities = 96/146 (65%), Positives = 117/146 (79%)
Frame = +1
Query: 112 INHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIPQFV 291
IN +T P++ RYYDIL+KR LPVW K+ F L +Q+ +LVGETGSGKTTQIPQ+
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 292 LEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKT 471
+E + +RG VACTQPRRVAAMSV++RVA+EMDV +G+EVGYSIRFEDCSS+KT
Sbjct: 175 VEYMRSLPGPKRG---VACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKT 231
Query: 472 VLKYLTDGMLLREAMADPLLDRYKVI 549
+LKY+TDGMLLREAM DPLL+RY VI
Sbjct: 232 ILKYMTDGMLLREAMNDPLLERYGVI 257
>gb|AAH03745.1| Similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15 [Mus
musculus]
Length = 421
Score = 188 bits (477), Expect = 4e-47
Identities = 96/146 (65%), Positives = 117/146 (79%)
Frame = +1
Query: 112 INHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIPQFV 291
IN +T P++ RYYDIL+KR LPVW K+ F L +Q+ +LVGETGSGKTTQIPQ+
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 292 LEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKT 471
+E + +RG VACTQPRRVAAMSV++RVA+EMDV +G+EVGYSIRFEDCSS+KT
Sbjct: 175 VEYMRSLPGPKRG---VACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKT 231
Query: 472 VLKYLTDGMLLREAMADPLLDRYKVI 549
+LKY+TDGMLLREAM DPLL+RY VI
Sbjct: 232 ILKYMTDGMLLREAMNDPLLERYGVI 257
>sp|O43143|DD15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein
15) (ATP-dependent RNA helicase #46)
gi|9624453|gb|AAF90182.1|AF279891_1 dead box protein 15
[Homo sapiens] gi|23273556|gb|AAH35974.1| DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 15 [Homo sapiens]
Length = 795
Score = 188 bits (477), Expect = 4e-47
Identities = 96/146 (65%), Positives = 117/146 (79%)
Frame = +1
Query: 112 INHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIPQFV 291
IN +T P++ RYYDIL+KR LPVW K+ F L +Q+ +LVGETGSGKTTQIPQ+
Sbjct: 115 INPFTNLPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWC 174
Query: 292 LEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKT 471
+E + +RG VACTQPRRVAAMSV++RVA+EMDV +G+EVGYSIRFEDCSS+KT
Sbjct: 175 VEYMRSLPGPKRG---VACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKT 231
Query: 472 VLKYLTDGMLLREAMADPLLDRYKVI 549
+LKY+TDGMLLREAM DPLL+RY VI
Sbjct: 232 ILKYMTDGMLLREAMNDPLLERYGVI 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,938,777
Number of Sequences: 1393205
Number of extensions: 11832718
Number of successful extensions: 58463
Number of sequences better than 10.0: 539
Number of HSP's better than 10.0 without gapping: 52660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57826
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
