>KMC000989A_C01 KMC000989A_c01
GGAAAGCAATGGCCAGATTACTTTGGCCCATAGCAAAACAACAGCTTAAGTAACAATTTT
CTGGGCTATCAAAATTCACTTTACAGGTAAGACAAGGGGCAATAATAGAAAAGCTTTCCC
CACCAACCTAAACCTCCCAAACCCTATAAAACCCAAACTAAAAAGAAAGAAGGGACACTT
CTCATCACTCAACAATACTCTAAAATAGAGTTCAAGGACCTCAAAACAAAAGAAAAGGAG
GGCTAAAGCTGGGAGCTATGAAAAGATATTTATGGTAACACAAACTAGCAGGAGTGAAAA
AGAGAAGGCCTGCATAAGTTTCTACCTGGTCTTACTTTAAGGGTCAATATCTGTTACAGG
TGCCCTACCTTTCAGGTCCTCGCGAGCAATCAGAAGATTATATGGGCAAATCTGGCAGCT
TCCATACTAAAACGTAGCCAATGGCCATGCTCTCCTCATGGAAACTCAACCATATTTGGG
CATTTCCCAAAAAAAAATTCCCCCAGATAGGACTCAATTATCTAACATCACTGTCAGGAC
TCAGTAGTTGCTTGGCCAATTGATCTGTGCATGCTGAGGCTGCTGCTGATA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000989A_C01 KMC000989A_c01
         (591 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_440506.1| cytochrome oxidase d subunit II [Synechocystis ...    33  2.7

>ref|NP_440506.1| cytochrome oxidase d subunit II [Synechocystis sp. PCC 6803]
           gi|7427820|pir||S75272 cytochrome d ubiquinol oxidase
           (EC 1.10.3.-) chain II - Synechocystis sp. (strain PCC
           6803) gi|1652263|dbj|BAA17186.1| cytochrome oxidase d
           subunit II [Synechocystis sp. PCC 6803]
          Length = 336

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 21/69 (30%), Positives = 32/69 (45%)
 Frame = -1

Query: 291 LLVCVTINIFS*LPALALLFFCFEVLELYFRVLLSDEKCPFFLFSLGFIGFGRFRLVGKA 112
           L     + IF+ +P + LLF    +  LY R   +     F +FSL FIG G        
Sbjct: 229 LFTAPLVYIFAAIPLVGLLFIGLLLRSLYLREENTPIIWTFLVFSLSFIGLG-------- 280

Query: 111 FLLLPLVLP 85
           F++ P ++P
Sbjct: 281 FIIFPNIIP 289

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,825,310
Number of Sequences: 1393205
Number of extensions: 11232558
Number of successful extensions: 32281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32249
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPDL020c10_f BP053237 1 443 2 MPDL072g04_f AV780217 24 517 3 GENLf049f05 BP064971 29 497 4 MFBL005c02_f BP041514 32 593 5 SPDL057d02_f BP055576 48 481 6 MRL033f05_f BP085357 48 249

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