Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000988A_C01 KMC000988A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564294.1| expressed protein; protein id: At1g27760.1, sup... 55 4e-07
gb|AAG50586.1|AC079280_17 unknown protein, 5' partial [Arabidops... 55 4e-07
gb|AAF24951.1|AC012375_14 T22C5.22 [Arabidopsis thaliana] 41 0.009
pir||T13996 pol protein - fruit fly (Drosophila melanogaster) ZA... 33 2.3
gb|ZP_00018470.1| hypothetical protein [Chloroflexus aurantiacus] 32 6.8
>ref|NP_564294.1| expressed protein; protein id: At1g27760.1, supported by cDNA:
gi_13605566, supported by cDNA: gi_16226242, supported
by cDNA: gi_18700285 [Arabidopsis thaliana]
gi|13605567|gb|AAK32777.1|AF361609_1 At1g27760/T22C5_5
[Arabidopsis thaliana]
gi|16226243|gb|AAL16113.1|AF428281_1 At1g27760/T22C5_5
[Arabidopsis thaliana] gi|18700286|gb|AAL77753.1|
At1g27760/T22C5_5 [Arabidopsis thaliana]
Length = 437
Score = 55.5 bits (132), Expect = 4e-07
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = -2
Query: 321 QRMFKSPNSFLNKARTQLLNKQRLMSEARNFGHYSARMVNEE 196
+R+FKSPNS LNKARTQ L KQR++++ N GHY+A + EE
Sbjct: 396 KRLFKSPNSALNKARTQFLAKQRMLAKNMNVGHYAATAMEEE 437
Score = 40.4 bits (93), Expect = 0.015
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -1
Query: 556 QENEFRHDVFSFTPKK---KHLSNHEHRMSGEEKVSLSKCLSSVIS 428
QENEF HDVFSFTPKK LSN E R+ +L+K + ++
Sbjct: 370 QENEFLHDVFSFTPKKIGGGKLSNDEKRLFKSPNSALNKARTQFLA 415
>gb|AAG50586.1|AC079280_17 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 65
Score = 55.5 bits (132), Expect = 4e-07
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = -2
Query: 321 QRMFKSPNSFLNKARTQLLNKQRLMSEARNFGHYSARMVNEE 196
+R+FKSPNS LNKARTQ L KQR++++ N GHY+A + EE
Sbjct: 24 KRLFKSPNSALNKARTQFLAKQRMLAKNMNVGHYAATAMEEE 65
Score = 34.3 bits (77), Expect = 1.0
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Frame = -1
Query: 547 EFRHDVFSFTPKK---KHLSNHEHRMSGEEKVSLSKCLSSVIS 428
EF HDVFSFTPKK LSN E R+ +L+K + ++
Sbjct: 1 EFLHDVFSFTPKKIGGGKLSNDEKRLFKSPNSALNKARTQFLA 43
>gb|AAF24951.1|AC012375_14 T22C5.22 [Arabidopsis thaliana]
Length = 83
Score = 41.2 bits (95), Expect = 0.009
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = -2
Query: 321 QRMFKSPNSFLNKARTQLLNKQRLMSE 241
+R+FKSPNS LNKARTQ L KQR++++
Sbjct: 24 KRLFKSPNSALNKARTQFLAKQRMLAK 50
>pir||T13996 pol protein - fruit fly (Drosophila melanogaster) ZAM
retrovirus-like element (fragment)
gi|2791289|emb|CAA04050.1| RNase H; integrase; protease;
reverse transcriptase [Drosophila melanogaster]
Length = 1217
Score = 33.1 bits (74), Expect = 2.3
Identities = 19/75 (25%), Positives = 39/75 (51%)
Frame = -3
Query: 233 TSVTTRPVWLTRSNAFESQLQKCFALVSNIHLVVSLIYQNNVSNFMCITHCCSCLLGNQI 54
TS +T P++L + +Q K F + + +++ L + N F +CC+ L N++
Sbjct: 152 TSKSTLPIFL-----YTNQASKIFNIPAYSKVILPLPVKTNHGEF----YCCTTQLNNEL 202
Query: 53 NLTSTLYRLKHSFLN 9
+L+ LY+ ++ N
Sbjct: 203 SLSEGLYKSNNNIAN 217
>gb|ZP_00018470.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 215
Score = 31.6 bits (70), Expect = 6.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 409 GLYRFTTPSRYFFFTVTCYHLLTSPILSPAENVQVS 302
G+Y TTP R+F F ++++T +LS N+++S
Sbjct: 24 GIYYTTTPERHFAFAFLAFNVVTFFVLSVLGNIELS 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,342,219
Number of Sequences: 1393205
Number of extensions: 8391155
Number of successful extensions: 21430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21429
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
