Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000985A_C01 KMC000985A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL79688.1|AC087599_7 putative phragmoplastin [Oryza sativa] 79 4e-14
pir||T47843 dynamin-like protein 4 (ADL4) - Arabidopsis thaliana... 74 7e-13
ref|NP_567094.1| dynamin-like protein 4 (ADL4); protein id: At3g... 74 7e-13
gb|AAF22292.1|AF180733_1 dynamin-like protein 4 [Arabidopsis tha... 62 4e-09
pir||T01586 probable phragmoplastin At2g44590 [imported] - Arabi... 58 7e-08
>gb|AAL79688.1|AC087599_7 putative phragmoplastin [Oryza sativa]
Length = 618
Score = 78.6 bits (192), Expect = 4e-14
Identities = 50/115 (43%), Positives = 67/115 (57%)
Frame = -3
Query: 481 NRANPAHQAAPNVDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKACGLLSGQTSHNSSL 302
++ + + P+VDRY + H RRI SNVSSYIGMVSDTL+NTIPKA + + SL
Sbjct: 506 DKTGTGNPSTPSVDRYADAHFRRIASNVSSYIGMVSDTLKNTIPKAVVHCQVREA-KRSL 564
Query: 301 LNHFPYTNRTERA*TH*QSC*MKTLP*WRGDKNVLKGLELYKADRDEIDSVSYAR 137
LN+F YT + + + K LELYK+ RDEID+VS++R
Sbjct: 565 LNYF-YTQVGRKDAKQLAQLLDEDPALMERRQQCFKRLELYKSARDEIDAVSWSR 618
>pir||T47843 dynamin-like protein 4 (ADL4) - Arabidopsis thaliana
gi|7076772|emb|CAB75934.1| dynamin-like protein 4 (ADL4)
[Arabidopsis thaliana]
gi|19423872|gb|AAL88715.1|AF488725_1 dynamin-like
protein E [Arabidopsis thaliana]
Length = 621
Score = 74.3 bits (181), Expect = 7e-13
Identities = 47/110 (42%), Positives = 65/110 (58%)
Frame = -3
Query: 466 AHQAAPNVDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKACGLLSGQTSHNSSLLNHFP 287
A ++ +D+YG+GH RRI SNVS+Y+ MVSDTLRNTIPKAC + + +LLN+F
Sbjct: 514 ASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQA-KLALLNYF- 571
Query: 286 YTNRTERA*TH*QSC*MKTLP*WRGDKNVLKGLELYKADRDEIDSVSYAR 137
Y+ ++R + K LELYK RDEID+V++ R
Sbjct: 572 YSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAWVR 621
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 254 LAELLDEDPTVMERRQKCFKR 192
L +LLDEDP +M+RR +C KR
Sbjct: 583 LGQLLDEDPALMDRRLECAKR 603
>ref|NP_567094.1| dynamin-like protein 4 (ADL4); protein id: At3g60190.1, supported
by cDNA: gi_16226787, supported by cDNA: gi_19423871,
supported by cDNA: gi_6651400 [Arabidopsis thaliana]
gi|11991508|emb|CAC19657.1| dynamin-like protein DLP2
[Arabidopsis thaliana]
gi|16226788|gb|AAL16262.1|AF428332_1 AT3g60190/T2O9_170
[Arabidopsis thaliana]
Length = 624
Score = 74.3 bits (181), Expect = 7e-13
Identities = 47/110 (42%), Positives = 65/110 (58%)
Frame = -3
Query: 466 AHQAAPNVDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKACGLLSGQTSHNSSLLNHFP 287
A ++ +D+YG+GH RRI SNVS+Y+ MVSDTLRNTIPKAC + + +LLN+F
Sbjct: 517 ASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQA-KLALLNYF- 574
Query: 286 YTNRTERA*TH*QSC*MKTLP*WRGDKNVLKGLELYKADRDEIDSVSYAR 137
Y+ ++R + K LELYK RDEID+V++ R
Sbjct: 575 YSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAWVR 624
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 254 LAELLDEDPTVMERRQKCFKR 192
L +LLDEDP +M+RR +C KR
Sbjct: 586 LGQLLDEDPALMDRRLECAKR 606
>gb|AAF22292.1|AF180733_1 dynamin-like protein 4 [Arabidopsis thaliana]
Length = 626
Score = 62.0 bits (149), Expect = 4e-09
Identities = 42/110 (38%), Positives = 60/110 (54%)
Frame = -3
Query: 466 AHQAAPNVDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKACGLLSGQTSHNSSLLNHFP 287
A ++ +D+YG+GH RRI SNVS+Y+ LRNTIPKAC + + +LLN+F
Sbjct: 519 ASLSSATLDQYGDGHFRRIASNVSAYVKWFRTLLRNTIPKACVYCQVRQA-KLALLNYF- 576
Query: 286 YTNRTERA*TH*QSC*MKTLP*WRGDKNVLKGLELYKADRDEIDSVSYAR 137
Y+ ++R + K LELYK RDEID+V++ R
Sbjct: 577 YSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAWVR 626
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 254 LAELLDEDPTVMERRQKCFKR 192
L +LLDEDP +M+RR +C KR
Sbjct: 588 LGQLLDEDPALMDRRLECAKR 608
>pir||T01586 probable phragmoplastin At2g44590 [imported] - Arabidopsis thaliana
gi|3341679|gb|AAC27461.1| putative phragmoplastin
[Arabidopsis thaliana]
Length = 613
Score = 57.8 bits (138), Expect = 7e-08
Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Frame = -3
Query: 445 VDRYGEGHSRRIGSNVSSYIGMVSDTLRNTIPKA---CGLLSGQTSHNSSLLNHFPYTNR 275
+D+YG+GH R+I SNV++YI MV++TL NTIPKA C + + SLLN+F Y
Sbjct: 512 IDQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKL----SLLNYF-YAQI 566
Query: 274 TERA*TH*QSC*MKTLP*WRGDKNVL--------KGLELYKADRDEIDSVSYAR 137
+ QS K L + L K LELYK RDEID+ + R
Sbjct: 567 S-------QSQQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVWVR 613
Score = 32.3 bits (72), Expect = 3.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 254 LAELLDEDPTVMERRQKCFKR 192
L +LLDE+P +MERR +C KR
Sbjct: 575 LGQLLDENPALMERRMQCAKR 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,557,768
Number of Sequences: 1393205
Number of extensions: 8491869
Number of successful extensions: 19531
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 18965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19483
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
