Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000983A_C01 KMC000983A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E84923 hypothetical protein At2g48110 [imported] - Arabidop... 123 1e-27
emb|CAA65335.1| cDNA101 [Arabidopsis thaliana] 123 1e-27
ref|NP_566125.1| unknown protein; protein id: At2g48110.1 [Arabi... 123 1e-27
dbj|BAC41797.1| unknown protein [Arabidopsis thaliana] 111 7e-24
ref|NP_189001.1| unknown protein; protein id: At3g23590.1 [Arabi... 111 7e-24
>pir||E84923 hypothetical protein At2g48110 [imported] - Arabidopsis thaliana
Length = 1226
Score = 123 bits (309), Expect = 1e-27
Identities = 56/104 (53%), Positives = 78/104 (74%)
Frame = -2
Query: 570 IDSLSTASKRRPKILAIHLDFLANXLDGKVSLRCDCATWRAYVSGIISLMVSCTPLWIQE 391
+DS ASKRRP++L +HL+F+ + L+GK+SL CD ATW+AYV+G +SLMV CTP W+ E
Sbjct: 1119 VDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLE 1178
Query: 390 LDVGLLKRVSMGLRQLNEEDLALRLLEIRGASVMGEVAEMIIQS 259
+DV ++KR+S LRQ NE+DLAL LL G MG E+I+++
Sbjct: 1179 VDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVET 1222
>emb|CAA65335.1| cDNA101 [Arabidopsis thaliana]
Length = 350
Score = 123 bits (309), Expect = 1e-27
Identities = 56/104 (53%), Positives = 78/104 (74%)
Frame = -2
Query: 570 IDSLSTASKRRPKILAIHLDFLANXLDGKVSLRCDCATWRAYVSGIISLMVSCTPLWIQE 391
+DS ASKRRP++L +HL+F+ + L+GK+SL CD ATW+AYV+G +SLMV CTP W+ E
Sbjct: 243 VDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLE 302
Query: 390 LDVGLLKRVSMGLRQLNEEDLALRLLEIRGASVMGEVAEMIIQS 259
+DV ++KR+S LRQ NE+DLAL LL G MG E+I+++
Sbjct: 303 VDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVET 346
>ref|NP_566125.1| unknown protein; protein id: At2g48110.1 [Arabidopsis thaliana]
Length = 1295
Score = 123 bits (309), Expect = 1e-27
Identities = 56/104 (53%), Positives = 78/104 (74%)
Frame = -2
Query: 570 IDSLSTASKRRPKILAIHLDFLANXLDGKVSLRCDCATWRAYVSGIISLMVSCTPLWIQE 391
+DS ASKRRP++L +HL+F+ + L+GK+SL CD ATW+AYV+G +SLMV CTP W+ E
Sbjct: 1188 VDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLE 1247
Query: 390 LDVGLLKRVSMGLRQLNEEDLALRLLEIRGASVMGEVAEMIIQS 259
+DV ++KR+S LRQ NE+DLAL LL G MG E+I+++
Sbjct: 1248 VDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVET 1291
>dbj|BAC41797.1| unknown protein [Arabidopsis thaliana]
Length = 1309
Score = 111 bits (277), Expect = 7e-24
Identities = 53/103 (51%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = -2
Query: 570 IDSLSTASKRRPK-ILAIHLDFLANXLDGKVSLRCDCATWRAYVSGIISLMVSCTPLWIQ 394
+DS S+ASKRR + IL HL+F+A+ LDGK+S+ C+ ATWR Y+SG++SLMVSC PLW+
Sbjct: 1203 VDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGLVSLMVSCLPLWVT 1262
Query: 393 ELDVGLLKRVSMGLRQLNEEDLALRLLEIRGASVMGEVAEMII 265
E+D +LK +S GLR+ +++LA+ LL + G M A+ II
Sbjct: 1263 EIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFII 1305
>ref|NP_189001.1| unknown protein; protein id: At3g23590.1 [Arabidopsis thaliana]
gi|9294515|dbj|BAB02777.1|
gb|AAD13716.2~gene_id:MDB19.7~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 1309
Score = 111 bits (277), Expect = 7e-24
Identities = 53/103 (51%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = -2
Query: 570 IDSLSTASKRRPK-ILAIHLDFLANXLDGKVSLRCDCATWRAYVSGIISLMVSCTPLWIQ 394
+DS S+ASKRR + IL HL+F+A+ LDGK+S+ C+ ATWR Y+SG++SLMVSC PLW+
Sbjct: 1203 VDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGLVSLMVSCLPLWVT 1262
Query: 393 ELDVGLLKRVSMGLRQLNEEDLALRLLEIRGASVMGEVAEMII 265
E+D +LK +S GLR+ +++LA+ LL + G M A+ II
Sbjct: 1263 EIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFII 1305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,787,997
Number of Sequences: 1393205
Number of extensions: 9621873
Number of successful extensions: 20187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20175
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
