Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000982A_C01 KMC000982A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF19398.1|AF203882_1 dynamin homolog [Astragalus sinicus] 173 1e-42
dbj|BAA88113.1| dynamin-like protein [Arabidopsis thaliana] 171 4e-42
ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, ... 170 1e-41
dbj|BAA77516.1| a dynamin-like protein ADL3 [Arabidopsis thaliana] 170 1e-41
gb|AAF22291.1|AF180732_1 dynamin-like protein 6 [Arabidopsis tha... 169 3e-41
>gb|AAF19398.1|AF203882_1 dynamin homolog [Astragalus sinicus]
Length = 930
Score = 173 bits (439), Expect = 1e-42
Identities = 101/152 (66%), Positives = 118/152 (77%), Gaps = 5/152 (3%)
Frame = +1
Query: 103 MEAIEELVQLSDSMRQATAVLADDEDIEDS-----KRRPSTFLHVVALGNVGAGKSAALN 267
M AIEEL +L+DSMRQA+AVLAD ED++++ RRPSTFL+VVALGNVGAGKSA LN
Sbjct: 1 MAAIEELSELADSMRQASAVLAD-EDVDETTGSANSRRPSTFLNVVALGNVGAGKSAVLN 59
Query: 268 SLIGHPVLPTGENGATRAPISIELNRDTSLNSKSIVLQIEQYILHAGFLASSLSHILLTG 447
SLIGHPVLPTGENGATRAPI I+L RDTSL+SKSI+LQI+ AS+L H L
Sbjct: 60 SLIGHPVLPTGENGATRAPICIDLQRDTSLSSKSIILQIDNKSQQVS--ASALRHSLQD- 116
Query: 448 *THAKVHLGRTRDEIYLKLATSTAPPLKLIDL 543
+K G+ RD+IYLKL TSTAPPLKL+DL
Sbjct: 117 -RLSKGSSGKGRDQIYLKLRTSTAPPLKLVDL 147
>dbj|BAA88113.1| dynamin-like protein [Arabidopsis thaliana]
Length = 921
Score = 171 bits (434), Expect = 4e-42
Identities = 101/151 (66%), Positives = 115/151 (75%), Gaps = 4/151 (2%)
Frame = +1
Query: 103 MEAIEELVQLSDSMRQATAVLAD-DEDIEDSKRRPSTFLHVVALGNVGAGKSAALNSLIG 279
MEAI+EL QLSDSMRQA ++LAD D D S RRP+T L+VVALGNVGAGKSA LNSLIG
Sbjct: 1 MEAIDELSQLSDSMRQAASLLADEDPDETSSSRRPATSLNVVALGNVGAGKSAVLNSLIG 60
Query: 280 HPVLPTGENGATRAPISIELNRDTSLNSKSIVLQIE---QYILHAGFLASSLSHILLTG* 450
HPVLPTGENGATRAPI I+L+R+ SL+SK+I+LQI+ Q + G L SL L G
Sbjct: 61 HPVLPTGENGATRAPIIIDLSREESLSSKAIILQIDNKNQQVSARGALRHSLQDRLSKGA 120
Query: 451 THAKVHLGRTRDEIYLKLATSTAPPLKLIDL 543
+ GR RDEIYLKL TSTAPPLKLIDL
Sbjct: 121 S------GRGRDEIYLKLRTSTAPPLKLIDL 145
>ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, supported by cDNA:
gi_15146178, supported by cDNA: gi_4803835, supported by
cDNA: gi_6526968 [Arabidopsis thaliana]
gi|25453548|pir||T52426 dynamin-like protein [imported]
- Arabidopsis thaliana gi|6526969|dbj|BAA88111.1|
dynamin-like protein [Arabidopsis thaliana]
gi|15146179|gb|AAK83573.1| At1g59610/T30E16_17
[Arabidopsis thaliana] gi|23397259|gb|AAN31911.1|
putative dynamin protein [Arabidopsis thaliana]
Length = 920
Score = 170 bits (430), Expect = 1e-41
Identities = 100/148 (67%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Frame = +1
Query: 103 MEAIEELVQLSDSMRQATAVLAD-DEDIEDSKRRPSTFLHVVALGNVGAGKSAALNSLIG 279
MEAI+EL QLSDSMRQA ++LAD D D S RRP+T L+VVALGNVGAGKSA LNSLIG
Sbjct: 1 MEAIDELSQLSDSMRQAASLLADEDPDETSSSRRPATSLNVVALGNVGAGKSAVLNSLIG 60
Query: 280 HPVLPTGENGATRAPISIELNRDTSLNSKSIVLQIEQYILHAGFLASSLSHILLTG*THA 459
HPVLPTGENGATRAPI I+L+R+ SL+SK+I+LQI+ + AS+L H L +
Sbjct: 61 HPVLPTGENGATRAPIIIDLSREESLSSKAIILQIDN--KNQQVSASALRHSLQD--RLS 116
Query: 460 KVHLGRTRDEIYLKLATSTAPPLKLIDL 543
K GR RDEIYLKL TSTAPPLKLIDL
Sbjct: 117 KGASGRGRDEIYLKLRTSTAPPLKLIDL 144
>dbj|BAA77516.1| a dynamin-like protein ADL3 [Arabidopsis thaliana]
Length = 836
Score = 170 bits (430), Expect = 1e-41
Identities = 100/148 (67%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Frame = +1
Query: 103 MEAIEELVQLSDSMRQATAVLAD-DEDIEDSKRRPSTFLHVVALGNVGAGKSAALNSLIG 279
MEAI+EL QLSDSMRQA ++LAD D D S RRP+T L+VVALGNVGAGKSA LNSLIG
Sbjct: 1 MEAIDELSQLSDSMRQAASLLADEDPDETSSSRRPATSLNVVALGNVGAGKSAVLNSLIG 60
Query: 280 HPVLPTGENGATRAPISIELNRDTSLNSKSIVLQIEQYILHAGFLASSLSHILLTG*THA 459
HPVLPTGENGATRAPI I+L+R+ SL+SK+I+LQI+ + AS+L H L +
Sbjct: 61 HPVLPTGENGATRAPIIIDLSREESLSSKAIILQIDN--KNQQVSASALRHSLQD--RLS 116
Query: 460 KVHLGRTRDEIYLKLATSTAPPLKLIDL 543
K GR RDEIYLKL TSTAPPLKLIDL
Sbjct: 117 KGASGRGRDEIYLKLRTSTAPPLKLIDL 144
>gb|AAF22291.1|AF180732_1 dynamin-like protein 6 [Arabidopsis thaliana]
Length = 914
Score = 169 bits (427), Expect = 3e-41
Identities = 97/148 (65%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Frame = +1
Query: 103 MEAIEELVQLSDSMRQATAVLAD-DEDIEDSKRRPSTFLHVVALGNVGAGKSAALNSLIG 279
MEAI+EL QLSDSM+QA ++LAD D D S +RP+TFL+VVALGNVGAGKSA LNSLIG
Sbjct: 1 MEAIDELSQLSDSMKQAASLLADEDPDETSSSKRPATFLNVVALGNVGAGKSAVLNSLIG 60
Query: 280 HPVLPTGENGATRAPISIELNRDTSLNSKSIVLQIEQYILHAGFLASSLSHILLTG*THA 459
HPVLPTGENGATRAPI IEL+R++SL+SK+I+LQI+ AS+L H L +
Sbjct: 61 HPVLPTGENGATRAPIIIELSRESSLSSKAIILQIDNKSQQVS--ASALRHSLQD--RLS 116
Query: 460 KVHLGRTRDEIYLKLATSTAPPLKLIDL 543
K G+ RDEI LKL TSTAPPLKL+DL
Sbjct: 117 KGASGKNRDEINLKLRTSTAPPLKLVDL 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,947,128
Number of Sequences: 1393205
Number of extensions: 10747339
Number of successful extensions: 40259
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 38155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40138
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
