Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000981A_C01 KMC000981A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196165.1| glycosyl hydrolase family 85; protein id: At5g0... 75 4e-13
gb|AAG50972.1|AC073395_14 hypothetical protein, 5' partial; 1-47... 68 7e-11
ref|NP_187715.1| glycosyl hydrolase family 85; protein id: At3g1... 68 7e-11
ref|NP_191659.1| putative protein; protein id: At3g61000.1 [Arab... 47 2e-04
ref|NP_267647.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact... 32 5.5
>ref|NP_196165.1| glycosyl hydrolase family 85; protein id: At5g05460.1 [Arabidopsis
thaliana] gi|10176758|dbj|BAB09989.1| contains
similarity to
endo-beta-N-acetylglucosaminidase~gene_id:K18I23.27
[Arabidopsis thaliana]
Length = 639
Score = 75.5 bits (184), Expect = 4e-13
Identities = 44/120 (36%), Positives = 66/120 (54%), Gaps = 3/120 (2%)
Frame = -3
Query: 566 SSWLVSGEFIKLNSDSQGSXTLDVKISWTPKDGK-NHLFSKYVVYLVRLSKQADGNPGRT 390
SSW++ +K GS TL K+ W K + + +F KY VY LS ++ P +
Sbjct: 501 SSWVIEAHHVKFVPGDSGSKTLSCKLEWRLKHPEEDSVFPKYNVYAENLSS-SEYRPRKV 559
Query: 389 SEHVNEE--YLGVAQVNSFYVSDLKVPLATSSLKFIIQVCGVDGTIQELDESPYYELIVE 216
E E +LG A V+++YVS++ V ++F++Q CG DG+ QELD SP L+VE
Sbjct: 560 MEEPRSEKVFLGTAHVDAYYVSEMVVGSDVKGVRFVVQTCGEDGSWQELDASP--NLVVE 617
>gb|AAG50972.1|AC073395_14 hypothetical protein, 5' partial; 1-478 [Arabidopsis thaliana]
Length = 158
Score = 68.2 bits (165), Expect = 7e-11
Identities = 38/120 (31%), Positives = 66/120 (54%), Gaps = 2/120 (1%)
Frame = -3
Query: 566 SSWLVSGEFIKLNSDSQGSXTLDVKISWTPKDGKNHLFSKYVVYLVRLSKQADGNPGRTS 387
SSW++ ++L + S L VK+ W KD ++ F++Y VY + K D P +
Sbjct: 34 SSWVIEAHNVELVPGNSSSKILRVKLEWRQKDLEDSAFTRYNVYAENV-KSTDLRPRKVL 92
Query: 386 EHVNEE--YLGVAQVNSFYVSDLKVPLATSSLKFIIQVCGVDGTIQELDESPYYELIVEG 213
E E LG+A V ++YV++L V +++F++Q CG D ++ +LDE+ + +EG
Sbjct: 93 EKPKSETVLLGIAHVPAYYVAELVVESDVKAVRFMVQACGEDASLGKLDEALNLLVDLEG 152
>ref|NP_187715.1| glycosyl hydrolase family 85; protein id: At3g11040.1 [Arabidopsis
thaliana] gi|6016690|gb|AAF01517.1|AC009991_13 unknown
protein [Arabidopsis thaliana]
Length = 701
Score = 68.2 bits (165), Expect = 7e-11
Identities = 38/120 (31%), Positives = 66/120 (54%), Gaps = 2/120 (1%)
Frame = -3
Query: 566 SSWLVSGEFIKLNSDSQGSXTLDVKISWTPKDGKNHLFSKYVVYLVRLSKQADGNPGRTS 387
SSW++ ++L + S L VK+ W KD ++ F++Y VY + K D P +
Sbjct: 577 SSWVIEAHNVELVPGNSSSKILRVKLEWRQKDLEDSAFTRYNVYAENV-KSTDLRPRKVL 635
Query: 386 EHVNEE--YLGVAQVNSFYVSDLKVPLATSSLKFIIQVCGVDGTIQELDESPYYELIVEG 213
E E LG+A V ++YV++L V +++F++Q CG D ++ +LDE+ + +EG
Sbjct: 636 EKPKSETVLLGIAHVPAYYVAELVVESDVKAVRFMVQACGEDASLGKLDEALNLLVDLEG 695
>ref|NP_191659.1| putative protein; protein id: At3g61000.1 [Arabidopsis thaliana]
gi|11358256|pir||T50521 hypothetical protein T27I15_90 -
Arabidopsis thaliana gi|8388616|emb|CAB94136.1| putative
protein [Arabidopsis thaliana]
Length = 217
Score = 47.0 bits (110), Expect = 2e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -3
Query: 515 GSXTLDVKISWTPKDGKNHLFSKYVVYLVRLSKQADGNPGRTSEHVNEE--YLGVAQVNS 342
GS +L VK+ W KD ++ F +Y VY + K D P + E E +LGVA V S
Sbjct: 9 GSKSLRVKLEWRQKDLEDSAFPRYNVYAENV-KSTDLRPRKVLEKPRSETVFLGVAHVPS 67
Query: 341 FYVSDLKVPLATSSLKFIIQ 282
+Y+++L V ++F+ +
Sbjct: 68 YYIAELVVESDVKGVRFVFK 87
>ref|NP_267647.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gi|25401718|pir||C86811 hypothetical protein ypcC
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12724486|gb|AAK05589.1|AE006379_6 UNKNOWN
PROTEIN [Lactococcus lactis subsp. lactis]
Length = 342
Score = 32.0 bits (71), Expect = 5.5
Identities = 20/70 (28%), Positives = 36/70 (50%)
Frame = -3
Query: 494 KISWTPKDGKNHLFSKYVVYLVRLSKQADGNPGRTSEHVNEEYLGVAQVNSFYVSDLKVP 315
++SW KN+ FS Y +Y + ++ ++E+LG + +N+F+V+ LK
Sbjct: 34 RLSWKSDANKNN-FSTYEIY-------------QLNDDGSKEFLGASNINAFFVNALKRG 79
Query: 314 LATSSLKFII 285
+S KF I
Sbjct: 80 KNINSTKFEI 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,894,895
Number of Sequences: 1393205
Number of extensions: 8741230
Number of successful extensions: 16426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16417
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
