Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000979A_C01 KMC000979A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_225679.1| similar to hypothetical protein FLJ20307 [Homo ... 34 0.76
ref|NP_788620.1| CG33208-PE [Drosophila melanogaster] gi|2838122... 34 1.00
gb|AAM55242.1|AF520713_1 MICAL short isoform [Drosophila melanog... 34 1.00
ref|NP_788621.1| CG33208-PB [Drosophila melanogaster] gi|2838122... 34 1.00
gb|AAM55243.1|AF520714_1 MICAL medium isoform [Drosophila melano... 34 1.00
>ref|XP_225679.1| similar to hypothetical protein FLJ20307 [Homo sapiens] [Rattus
norvegicus]
Length = 1538
Score = 34.3 bits (77), Expect = 0.76
Identities = 23/84 (27%), Positives = 43/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 182 ASMVASGSSQMSPSVSVP-EKGSRNKRKFRADPPLGEPSIITHSPQQESLSYEFSAENFQ 358
+S V +GSS++S S+++P E+ S+N +F+ P ++ + P S+ Y+ + +
Sbjct: 1018 SSNVEAGSSEISKSITIPEEEHSQNSEEFQISPHQSSGTLQSRHPADCSILYDNTNLDMS 1077
Query: 359 KALVHGQLTA------SDMYQDHS 412
K L A S+ +DHS
Sbjct: 1078 KVLCAPDSVAVVAEQESNFNEDHS 1101
>ref|NP_788620.1| CG33208-PE [Drosophila melanogaster] gi|28381221|gb|AAO41531.1|
CG33208-PE [Drosophila melanogaster]
Length = 2734
Score = 33.9 bits (76), Expect = 1.00
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 182 ASMVASGSSQMSPSVSVPEKGSRNKRKFRADPPLGEPSIITHSPQQESLSYEFSAENFQK 361
ASM+A+G +PS S + + P ++ PQ+E L +F + +
Sbjct: 1928 ASMLAAGKGDSTPSSSEQQPKTSTVTSSSTGPNSSTTGNVSKEPQEEDLQIQF---EYVR 1984
Query: 362 ALVH--GQLTASDMYQDHSDGLKLGLGLSIPVVSSGVILSEPKEE 490
AL Q++ + L L S PV+ S ++P EE
Sbjct: 1985 ALQQRISQISTQRRKSSKGEAPNLQLNSSAPVIESAEDPAKPAEE 2029
>gb|AAM55242.1|AF520713_1 MICAL short isoform [Drosophila melanogaster]
Length = 2734
Score = 33.9 bits (76), Expect = 1.00
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 182 ASMVASGSSQMSPSVSVPEKGSRNKRKFRADPPLGEPSIITHSPQQESLSYEFSAENFQK 361
ASM+A+G +PS S + + P ++ PQ+E L +F + +
Sbjct: 1928 ASMLAAGKGDSTPSSSEQQPKTSTVTSSSTGPNSSTTGNVSKEPQEEDLQIQF---EYVR 1984
Query: 362 ALVH--GQLTASDMYQDHSDGLKLGLGLSIPVVSSGVILSEPKEE 490
AL Q++ + L L S PV+ S ++P EE
Sbjct: 1985 ALQQRISQISTQRRKSSKGEAPNLQLNSSAPVIESAEDPAKPAEE 2029
>ref|NP_788621.1| CG33208-PB [Drosophila melanogaster] gi|28381222|gb|AAO41532.1|
CG33208-PB [Drosophila melanogaster]
Length = 3002
Score = 33.9 bits (76), Expect = 1.00
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 182 ASMVASGSSQMSPSVSVPEKGSRNKRKFRADPPLGEPSIITHSPQQESLSYEFSAENFQK 361
ASM+A+G +PS S + + P ++ PQ+E L +F + +
Sbjct: 2196 ASMLAAGKGDSTPSSSEQQPKTSTVTSSSTGPNSSTTGNVSKEPQEEDLQIQF---EYVR 2252
Query: 362 ALVH--GQLTASDMYQDHSDGLKLGLGLSIPVVSSGVILSEPKEE 490
AL Q++ + L L S PV+ S ++P EE
Sbjct: 2253 ALQQRISQISTQRRKSSKGEAPNLQLNSSAPVIESAEDPAKPAEE 2297
>gb|AAM55243.1|AF520714_1 MICAL medium isoform [Drosophila melanogaster]
Length = 3002
Score = 33.9 bits (76), Expect = 1.00
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +2
Query: 182 ASMVASGSSQMSPSVSVPEKGSRNKRKFRADPPLGEPSIITHSPQQESLSYEFSAENFQK 361
ASM+A+G +PS S + + P ++ PQ+E L +F + +
Sbjct: 2196 ASMLAAGKGDSTPSSSEQQPKTSTVTSSSTGPNSSTTGNVSKEPQEEDLQIQF---EYVR 2252
Query: 362 ALVH--GQLTASDMYQDHSDGLKLGLGLSIPVVSSGVILSEPKEE 490
AL Q++ + L L S PV+ S ++P EE
Sbjct: 2253 ALQQRISQISTQRRKSSKGEAPNLQLNSSAPVIESAEDPAKPAEE 2297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,461,526
Number of Sequences: 1393205
Number of extensions: 7961885
Number of successful extensions: 23951
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23927
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
